RetrogeneDB ID:
retro_opri_393
Organism:
Location:
scaffold_10673:15596-15971 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.8 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS25
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S25 [Source:HGNC Symbol;Acc:10413]

Genomic region (view in browser)





>retro_opri_393
ATGCCACCCGAGGACGACAAGAAGAAGAAAGACGCCGGGAAATCGGCCAAGAAGGATAAG
GACCCCGTGAACAAATCGGGGGGCAAGGCCAAGAAGAAGAAGTGGTCCAAAGGAAAAGTT
CGGGACAAGCTCAACAACCTGGTTCTGTTTGACAAAGCCACGTTCGGCAAGCTCTGCAAG
GAAGTCCCCAACTACAAGCTCATCACGCCCGCTGTGGTCTCCGAGAGACTCAAGATCCGT
GGGTCCCTGGCCAGGGCAGCCCTGCAGGAGCTCCTAAGTAAAGGACTTATCAAACTGGTT
TCAAAGCACAGAGCTCAAGTAATTTACACCAGAAACACCAAGGGTGGAGACGCACCAGCT
GCTACTGAAGATGCG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLV
MPP.DDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKAT..KLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLV
Retrocopy
MPPEDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATFGKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLV


Parental protein
SKHRAQVIYTRNTKGGDAPAAAEDA
SKHRAQVIYTRNTKGGDAPAA.EDA
Retrocopy
SKHRAQVIYTRNTKGGDAPAATEDA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide