RetrogeneDB ID:
retro_opri_396
Organism:
Location:
scaffold_10764:68274-68676 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
98.51 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PFDN4
Parental gene aliases:
No gene alias available
Parental gene description:
prefoldin subunit 4 [Source:HGNC Symbol;Acc:8868]

Genomic region (view in browser)





>retro_opri_396
ATGGCGGACACCATGAAGAAGGCAGCTGCAGAAGATGTCAATGTTACTTTTGAAGATCAA
CAAAAGATAAATAAATTTGCACGGAATACGAGTAGAATCACAGAGCTAAAAGAAGAAATA
GAAGTAAAAAAGAAACAACTCCAGAATTTAGAGGATGCTTGTGATGATATCATGCTTGCA
GATGACGACTGCTTGATGATTCCTTATCAAATTGGTGATGTTTTCATTAGCCACTCACAA
GAAGAAACACAGGAAATGTTAGAAGAGGCAAAGAAAAATTTGCAAGAAGAAACTGACGCC
TTAGAATCCAGAGTGGAATCAATTCAACGGGTGTTAGCAGATTTGAAAGTTCAATTATAT
GCAAAATTTGGGAGCAACATAAACCTTGAAGCTGACGAAAGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAATMKKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDA
MA.TMKKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEE.DA
Retrocopy
MADTMKKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEETDA


Parental protein
LESRVESIQRVLADLKVQLYAKFGSNINLEADES
LESRVESIQRVLADLKVQLYAKFGSNINLEADES
Retrocopy
LESRVESIQRVLADLKVQLYAKFGSNINLEADES


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide