RetrogeneDB ID:
retro_opri_425
Organism:
Location:
scaffold_11544:3617-3965 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.24 %
Coverage:
86.57 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PFDN4
Parental gene aliases:
No gene alias available
Parental gene description:
prefoldin subunit 4 [Source:HGNC Symbol;Acc:8868]

Genomic region (view in browser)





>retro_opri_425
ATGGCAGCCACCATGAAGAAGGCGGCTGCAGAAAACGTCAATGTTACTTTTGAAGATCAA
CAAAAGATAAATAAATTTGCACGGAATATGAGTAGAATCACAGAGCTAAAAGCAGAAACA
GAAGTAAAAAGGAAACAACTCCAGAATCTGGAAGACGCCTGTGATGATATCATGCTTGCA
GATGATAACTGCTTAATGATTCCTTGTCAAATTGGTGATGTTTTCATTAGCCACTCACAA
GAAGAAACACAGGAAATGTTAGAAGAGGCAAAGAAAAATTTGCAAGAAGAAATCGACACC
TTAGAATCCAGAGTGGAATCAATTCAATGGGTGTTAGCAGATTTGAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAATMKKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDA
MAATMKKAAAE.VNVTFEDQQKINKFARN.SRITELK.E.EVK.KQLQNLEDACDDIMLADD.CLMIP.QIGDVFISHSQEETQEMLEEAKKNLQEEID.
Retrocopy
MAATMKKAAAENVNVTFEDQQKINKFARNMSRITELKAETEVKRKQLQNLEDACDDIMLADDNCLMIPCQIGDVFISHSQEETQEMLEEAKKNLQEEIDT


Parental protein
LESRVESIQRVLADLK
LESRVESIQ.VLADLK
Retrocopy
LESRVESIQWVLADLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide