RetrogeneDB ID:
retro_opri_441
Organism:
Location:
scaffold_1218:168410-169148 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.56 %
Coverage:
90.41 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
COX11
Parental gene aliases:
No gene alias available
Parental gene description:
cytochrome c oxidase assembly homolog 11 (yeast) [Source:HGNC Symbol;Acc:2261]

Genomic region (view in browser)





>retro_opri_441
TGGGCTGCGGACGGGGCGGAAGCGTTCCTCAGACGGGCATGGAGCGGGACAGGAAGTGCT
GAGACGGGGCTGAGGTGGCGGCACGGGACATGGAAGCGCCCGAACCTGGCCGGGCAGCCC
GGGCGGCGGCCGAAGAGCACGAACCCGTTCACGCGCGCCCAGGAGGAGGACTGGCGGCGG
CGGAACAAGACGGTGCTCACGTACGTGGCCGCGGCCGCCGTGGGCATGCTGGGGGCGTCT
TACGCCGCGGTGCCCCTCTATCGGCTCTATTGCCAGACTACCGGGCTTGGAGGATCAGCA
GTAGCAGGTCATGGATCAGACCAAATTGAAAACATGGTACCCGTTAAGGATCGGATCATC
AAAGTCACCTTTAATGCAGATGTGCACGCCAGTCTGCAGTGGAACTTCAGACCTCAGCAG
ACGGAAATATATGTGGTGCCAGGAGAGACTGCATTAGCGTTTTATAAAGCAAAGAATCCT
ACTGACAAACCAGTGATTGGAATTTCTACGTACAATGTTGTACCATTTGAAGCTGGGCAA
TATTTCAATAAAATACAGTGTTTCTGTTTTGAAGAACAAAGGCTTAATCCCCAAGAGGAG
GTGGATATGCCAGTGTTTTTCTACATTGATCCTGAATTTGCTGAAGGTCCAAGAATAGTG
AATGTTGATCTTATCACTCTTTTCTATACTTTTTTTGAAGCAAAAGAAGGACACAAATTG
CCCATCCCAGGGTATAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
WAADGAEAFPRRAWSGTGSAETGLRWRHGTWKRPN-ARQPGRRPKSTNPFTRAQEEDWRRRNKTVLTYVAAAAVGMLGASYAAVPLYRLYCQTTGLGGSA
WAADGAEAF.RRAWSGTGSAETGLRWRHGTWKRPN.A.QPGRRPKSTNPFTRAQEEDWRRRNKTVLTYVAAAAVGMLGASYAAVPLYRLYCQTTGLGGSA
Retrocopy
WAADGAEAFLRRAWSGTGSAETGLRWRHGTWKRPNLAGQPGRRPKSTNPFTRAQEEDWRRRNKTVLTYVAAAAVGMLGASYAAVPLYRLYCQTTGLGGSA


Parental protein
VAGHGSDQIENMVPVKDRIIKVTFNADVHASLQWNFRPQQTEIYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEE
VAGHGSDQIENMVPVKDRIIKVTFNADVHASLQWNFRPQQTEIYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEE
Retrocopy
VAGHGSDQIENMVPVKDRIIKVTFNADVHASLQWNFRPQQTEIYVVPGETALAFYKAKNPTDKPVIGISTYNVVPFEAGQYFNKIQCFCFEEQRLNPQEE


Parental protein
VDMPVFFYIDPEFAEDPRMVNVDLITLSYTFFEAKEGHKLPIPGYN
VDMPVFFYIDPEFAE.PR.VNVDLITL.YTFFEAKEGHKLPIPGYN
Retrocopy
VDMPVFFYIDPEFAEGPRIVNVDLITLFYTFFEAKEGHKLPIPGYN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide