RetrogeneDB ID:
retro_opri_443
Organism:
Location:
scaffold_122691:697-1114 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.66 %
Coverage:
97.89 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
AP1S3
Parental gene aliases:
No gene alias available
Parental gene description:
adaptor-related protein complex 1, sigma 3 subunit [Source:HGNC Symbol;Acc:18971]

Genomic region (view in browser)





>retro_opri_443
ATGCAGTTTATGTTGGTTTTTAGTCGTCAGGGGAAGCTTCGACTGCAGAAATGGTATGTG
CCACTGTCAGACAAAGAGAAGAAAAAGATCACAAGAGAACTTGTTCAGACCGTCTTAGCA
CGGAAACCAAAAAGGTGCAACTTTCTCAAGTGGCGAGATCTGAAGATTGTTTATAAAAGG
TACGCAAGTCTGTATTTCTGCTGTGCCATTGAGGACCAGGACAATGAACTCATTACCCTG
GAAATAATTCATCGCTATGTGGAGTTACTCGACAAGTATTTTGGCAGCGTGTGTGAACTT
GATATTATCTTCAATTTTGAGGCGGCTTACTTTATTTTGGATGAGTTTCTTTTGGGAGGA
GAAGTTCAAGAAACATCCAAGAAAAATGTCCTTAAACCCATTGAACAGGCTGATCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IHFILLFSRQGKLRLQKWYTTLSDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYKRYASLYFCCAVENQDNELLTLEVVHRYVELLDKYFGNVCEL
..F.L.FSRQGKLRLQKWY..LSDKE.KKITRE.VQ..L.R......F..W..LK.VYKRYASLYFCCA.E.QDNEL.TLE..HRYVELLDKYFG.VCEL
Retrocopy
MQFMLVFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKRCNFLKWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCEL


Parental protein
DIIFNFEKAYFILDEFIIGGEVQETSKKVAVKAIEDSDM
DIIFNFE.AYFILDEF..GGEVQETSKK...K.IE..D.
Retrocopy
DIIFNFEAAYFILDEFLLGGEVQETSKKNVLKPIEQADL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide