RetrogeneDB ID:
retro_opri_448
Organism:
Location:
scaffold_1230:217024-217678 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
98.17 %
Coverage:
84.17 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SYPL1
Parental gene aliases:
No gene alias available
Parental gene description:
synaptophysin-like 1 [Source:HGNC Symbol;Acc:11507]

Genomic region (view in browser)





>retro_opri_448
TTTGCCTCCATCTTTACGTTTGCTACCTGTGGAGGTTTTAAGGGCAAAACAGAGGTTCTG
GTGAATTGTCCTCCTCAGATTACTGCCAATGAGACTATTACAGCCTCTTTTGGTTATCCG
TTCAGGTTGAATCAGGCGTCATTTCAGGCATCTGCAGATGTAAATCTGTGTAATGTGACT
TGGGGAGATCATGTCCTCATAGGAGATTACTCTTCCTCAGCACAGTTCTATGTTACATTC
GCAGTGCTTGTGTTCTTGTACTGCATCGGTGCCCTTGTGCTGTATGTTGGTTACACGAAC
CGATACCGAGATAGTCGCAAACTGCCTATGGTTGACTTCGTTTGTACCCTTATTTTCACT
TTTTTGTGGTTGGTGAGCACTTCAGCCTGGGCTAAAGCTCTTACGGATATTAAAGTGACC
ACTGGTCACAGCATTGTTCAGGAACTTCTGCCTTGCAAAGATCCGAAAGTGCATTGTTAC
TTTGGCTCTGTGACCAGCATGGGATCCCTAAATGTGTCAGTGATCTTTGGCTTTTTGAAC
ATGATACTTTGGGGAGGAAATGCGTGGTTTGTGTACAAGGAGACGAGTTTACATAGCCCA
TCGAATACTTCCACTGCCCATGGTCAAGGAGGTGTTGCGCCTCCTGCTGGAATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FASIFTFATCGGFKGKTEVLVNCPPQITANETITASFGYPFRLNQASFQASADVNLCNVTWGDHVLIGDYSSSAQFYVTFAVLVFLYCIGALVLYVGYTN
FASIFTFATCGGFKGKTEVLVNCPPQITANETITASFGYPFRLNQASFQASADVNLCNVTWGDHVLIGDYSSSAQFYVTFAVLVFLYCIGALVLYVGYTN
Retrocopy
FASIFTFATCGGFKGKTEVLVNCPPQITANETITASFGYPFRLNQASFQASADVNLCNVTWGDHVLIGDYSSSAQFYVTFAVLVFLYCIGALVLYVGYTN


Parental protein
RYRDSRKLPMVDFVCTLIFTFLWLVSTSTWFKALTDIKVTTGHSIVQELLPCKDPKVHCYFRSHTSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHSP
RYRDSRKLPMVDFVCTLIFTFLWLVSTS.W.KALTDIKVTTGHSIVQELLPCKDPKVHCYF.S.TSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHSP
Retrocopy
RYRDSRKLPMVDFVCTLIFTFLWLVSTSAWAKALTDIKVTTGHSIVQELLPCKDPKVHCYFGSVTSMGSLNVSVIFGFLNMILWGGNAWFVYKETSLHSP


Parental protein
SNTSTAHGQGGVAPPAGM
SNTSTAHGQGGVAPPAGM
Retrocopy
SNTSTAHGQGGVAPPAGM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide