RetrogeneDB ID:
retro_opri_450
Organism:
Location:
scaffold_123441:212-437 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.0 %
Coverage:
81.52 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SNRPE
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide E [Source:HGNC Symbol;Acc:11161]

Genomic region (view in browser)





>retro_opri_450
ATGGCGTACCGGGGCCTGGGCCAGAAAGTACAGAAGTGGAAGGTGCAGCCCATCAGCCTC
ATCTTCAGACACCTGCAAAACAGGTCTCGCATTCAGGTGTGGCTGTCTGAGCAGGTGAAC
AAGCGGACAGAGGGCTGCATCGTTGGCTTTGATGAATACATGAACCTCGTACTAGATGGT
GCACCAGAGATTCATTCTAAAAGTCAAGAAAACAACTGGGTCGGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLG
MAYRG.GQKVQK..VQPI.LIFR.LQNRSRIQVWL.EQVN.R.EGCI.GFDEYMNLVLD.A.EIHSK.......G
Retrocopy
MAYRGLGQKVQKWKVQPISLIFRHLQNRSRIQVWLSEQVNKRTEGCIVGFDEYMNLVLDGAPEIHSKSQENNWVG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide