RetrogeneDB ID:
retro_opri_463
Organism:
Location:
scaffold_12731:46849-47146 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.96 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CMC1
Parental gene aliases:
No gene alias available
Parental gene description:
COX assembly mitochondrial protein 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28783]

Genomic region (view in browser)





>retro_opri_463
CAGCATCTCAGACATGTTGAAAAAGATGTTTTGATCCCTAAAATAATGAGAGAAAAGGCC
AAAGAGAGGTGTTCTGAACAAGTTCAAGATTTTACCAAATGTTGCAAGGAATCTAGACTC
CTTATGGTAGAAAAGTGTCGGAAAGAAAATTCTGCATTGAAAGAATGTCTAACTGCCTAC
TATAAAGATCCAGCCTTTTATGAAGAATGCAAAATGGAGTACCTGAAGGAAAGGGAAGAG
TTCAGAAAAACTGGAATTCCTGCTAAGAAAAGATTACAGAAGCTTCCTACCAGCATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QHLRHVEKDVLIPKIMREKARERCSEQVQDFTKCCKESGLLMVVKCRKENSALKECLTAYYKDPAFYEECKMEYLKEREEFRKTGIPTKKRLQKLPTSM
QHLRHVEKDVLIPKIMREKA.ERCSEQVQDFTKCCKES.LLMV.KCRKENSALKECLTAYYKDPAFYEECKMEYLKEREEFRKTGIP.KKRLQKLPTSM
Retrocopy
QHLRHVEKDVLIPKIMREKAKERCSEQVQDFTKCCKESRLLMVEKCRKENSALKECLTAYYKDPAFYEECKMEYLKEREEFRKTGIPAKKRLQKLPTSM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide