RetrogeneDB ID:
retro_opri_476
Organism:
Location:
scaffold_1331:8600-8996 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.85 %
Coverage:
82.5 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
FAM96A
Parental gene aliases:
No gene alias available
Parental gene description:
family with sequence similarity 96, member A [Source:HGNC Symbol;Acc:26235]

Genomic region (view in browser)





>retro_opri_476
CAGCCCCGGATCATGGAAGAGAAAGTGCTAGAGGTTTATGATTTGATTCGAACTATCCGG
GACCCAGAAAAACCCAATACTTTGGAAGAACTGGAAGTGGTGACGGAAAGCTGCGTGGAG
GTTCAGGAGATAAATGAAGACGACTACTTGGTTGTCATCAGGTTCACACCAACAGTACCT
CATTGCTCTTTGGCAACTCTTATTGGGCTATGCTTAAGAGTAAAACTTCAGAGATGTTTA
CCATTTAACCATAAGTTGGAGATCTACATTTCTGAAGGAACTCACTCAACAGAAGAAGAC
ATCAACAAGCAGATCAATGACAAAGAGCGGGTGGCCGCTGCAATGGAGAACCCCAACCTA
CGGGAGATAGTGGAACAGTGTGTCCCGGAGCTTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QPRIMEEKALEVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVVIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKXXXXXXXXXXXXXXX
QPRIMEEK.LEVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVVIRFTPTVPHCSLATLIGLCLRVKLQRCLPF.HK...............
Retrocopy
QPRIMEEKVLEVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVVIRFTPTVPHCSLATLIGLCLRVKLQRCLPFNHKLEIYISEGTHSTEED


Parental protein
XNKQINDKERVAAAMENPNLREIVEQCVLEPD
.NKQINDKERVAAAMENPNLREIVEQCV.E.D
Retrocopy
INKQINDKERVAAAMENPNLREIVEQCVPELD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide