RetrogeneDB ID:
retro_opri_486
Organism:
Location:
scaffold_13680:189-738 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.57 %
Coverage:
78.02 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CAPNS1
Parental gene aliases:
No gene alias available
Parental gene description:
calpain, small subunit 1 [Source:HGNC Symbol;Acc:1481]

Genomic region (view in browser)





>retro_opri_486
CGGATAGTCGGAGGGATTGTGAATTTTATCAGTGAAGCTGCAGCAGCTCAGTATACTCCA
GAACCACCTCCCCCTCAGAAGCACTTCACCCATGTGGAGGCCCATGAAAGCGAAGAAGAG
AGGCGATTTCGGCGACAGTTTGAGCAACTGGCCGGTCCAGACCTGGAGGTGGGTGCCACC
GACCTGATGAATATTCTCAACAAAGTCATCTCTAAACACAAGGAGACCCTGAAGACAGAC
AGCTTCAGCCTTGACACGTGCCGGAGCATTGTGTCTGTCATGGACAGTGACACGAACGGG
AAGCTGGGCTTTGAAGAATTCAAGTACCTGTGGAACAACATTAAGAAGTGGCAGTGTGTG
TATAAGCAGTACGACAAGGATAGCTCTGGGTGTCTGCGTGGTTCCCAGCTGCGGCAGGCT
GTGCAGGCAGCAGGCTTCCAGCTGAACGAGCAGATCCACGAAATGATCGTGCGCCGCTAC
ACTGATGAGGATGGCAGTATGGATTTTAACAACTTCATCAGCTGCCTTGTCCGCCTGGAC
GGCATGTTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RILGGVISAISEAAA-QNNLEPPPPRSHYSNIEANESEEVRQFRKLFAQLAGDDMEVSATELMNILNKVVTRHPD-LKTDGFGIDTCRSMVAVMDSDTTG
RI.GG....ISEAAA.Q...EPPPP..H....EA.ESEE.R.FR..F.QLAG.D.EV.AT.LMNILNKV...H...LKTD.F..DTCRS.V.VMDSDT.G
Retrocopy
RIVGGIVNFISEAAAAQYTPEPPPPQKHFTHVEAHESEEERRFRRQFEQLAGPDLEVGATDLMNILNKVISKHKETLKTDSFSLDTCRSIVSVMDSDTNG


Parental protein
KLGFEEFKYLWNNIKKWQAIYKQFDMDRSGTICSSELPGAFEAAGFHLNTHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMF
KLGFEEFKYLWNNIKKWQ..YKQ.D.D.SG....S.L..A..AAGF.LN.....MI.RRY.DE.G.MDF.NFISCLVRLD.MF
Retrocopy
KLGFEEFKYLWNNIKKWQCVYKQYDKDSSGCLRGSQLRQAVQAAGFQLNEQIHEMIVRRYTDEDGSMDFNNFISCLVRLDGMF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide