RetrogeneDB ID:
retro_opri_494
Organism:
Location:
scaffold_1392:259344-259932 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
98.98 %
Coverage:
63.43 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
TOMM34
Parental gene aliases:
No gene alias available
Parental gene description:
translocase of outer mitochondrial membrane 34 [Source:HGNC Symbol;Acc:15746]

Genomic region (view in browser)





>retro_opri_494
GTCGACGAGAACCTGATGCCAGCCCTGGAAGGCATCAACAGAATGACCAGAGCTCTCATG
GACTCCCTCGGGCCCGAGTGGCGCGGGAAGCTGCCCTCTATCCCTCTGGTGCCTGTGTCA
GCTCAGAAGAGATGGAATTCCTTGCCTTCAAAGAACTCCCAAGAGACGGCTAAAAGCAGA
TACAAGGAAACCACAACTACCAAGAGCAGAGTGCCTTCTGCTGGGGATGTGGAGAGAGCC
CGAGCGCTGAAGGAAGAAGGCAATGAGCTTGTCAAGAAGGGCAACCATAAGAAAGCCCTG
GAGAAGTACAGTGAGAGCCTCTCGTTTAGTAACCTGGAGTCAGCCACATACAGCAACAGA
GCGCTCTGCCATCTGGTCCTGAAGCAGTACAAGGAGGCTGTGAAGGATTGCACAGAAGCC
CTCAAGCTGGATGGGAAGAACGTGAAGGCGTTTTACAGACGGGCTCAAGCCTACAAGGCT
CTCAAGGACTATAAATCCAGCTTCGCAGACATCAGCAGCCTCCTACAAATTGAGCCCAGG
AATGGCCCTGCACAGAAGTTACGGCAGGAAATTAACCAGAACCTGCAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IDENLMPALEGINRMTRALMDSLGPEWRGKLPSIPLVPVSAQKRWNSLPSENSQETAKSRYKETTTTKSRVPSAGDVERARALKEEGNELVKKGNHKKAL
.DENLMPALEGINRMTRALMDSLGPEWRGKLPSIPLVPVSAQKRWNSLPS.NSQETAKSRYKETTTTKSRVPSAGDVERARALKEEGNELVKKGNHKKAL
Retrocopy
VDENLMPALEGINRMTRALMDSLGPEWRGKLPSIPLVPVSAQKRWNSLPSKNSQETAKSRYKETTTTKSRVPSAGDVERARALKEEGNELVKKGNHKKAL


Parental protein
EKYSESLSFSNLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSFADISSLLQIEPRNGPAQKLRQEINQNLH
EKYSESLSFSNLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSFADISSLLQIEPRNGPAQKLRQEINQNLH
Retrocopy
EKYSESLSFSNLESATYSNRALCHLVLKQYKEAVKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSFADISSLLQIEPRNGPAQKLRQEINQNLH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide