RetrogeneDB ID:
retro_opri_5
Organism:
Location:
scaffold_6355:74670-75636 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
100.0 %
Coverage:
69.03 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_opri_5
GATGAGCTGTGGAGGATCCAGGAGAAGTTGGAATGTTACTTTGGCTCCTTGGTTGGCTCA
AATGTGTACATAACCCCTGCCGGATCTCAGGGCCTCCCACCGCACTATGATGATGTTGAG
GTTTTTATCCTGCAACTAGAAGGAGAGAAACATTGGCGCCTCTACCACCCAACAGTGCCC
CTGGCGCGGGAGTACAGCGTGGAAGCCGAGGATAGGATCGGCAGGCCGACACATGAGTTC
ACATTGAAGCCAGGTGATTTGTTGTACTTTCCCAGAGGGACCATTCACCAAGCAGACACT
CCTCTGGGGCTGGCCCACTCTACTCATGTGACTATCAGCACCTACCAAAACAGTTCATGG
GGAGATTTCCTTTTGGACACCATTTCGGGGCTTGTGTTTGATGCTACAAAGGAAGATGTG
ACATTGCGGGCTGGCATACCCCGGCAACTGCTTCTGCAGGCAGAAACCACAACTGTTGCA
GCAAGGAGACTAAGTGGTTTTCTGAGGAGGCTTGCAGAGAGGCTGGAAGGCACCAAAGAA
CTCCTTTCATCAGACATGAAGAAGGATTTTATTATGCATAGGTTGCCCCCATACCATGTG
GGAGATGGAACAGAACTGACAACACCAGGTGGAGAGTTACCGAGGTTGAACAGCACAGTG
ACGCTGCAGTTTAAAGACCACATCATCCTCACAGTAGGGCCAGATCAGGACCGATCTGAT
GAAGCTCAAGAAAAGATGATTTACATCTATCATTCCTTAAAGAATAAGAGGGAGACACAC
ATGATGGGAAGTGAGGAGGAAACAGAGGCTCATGGACTTCGCTTTCCTTTGTCGCATATG
GAGGCACTAAAGCAGATCTGGAACAGTACGACTGTTTCTGTCAAGAGCCTGAAACTTGCA
ACAGATGAAGAAAAGGAAAGCCTGGTCTTATCCCTCTGGACAGAATGTTTAATCCAAGTA
GCCTAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEDRIGRPTHEFTLKPGDLLYFPRGTIHQADT
DELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEDRIGRPTHEFTLKPGDLLYFPRGTIHQADT
Retrocopy
DELWRIQEKLECYFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEDRIGRPTHEFTLKPGDLLYFPRGTIHQADT


Parental protein
PLGLAHSTHVTISTYQNSSWGDFLLDTISGLVFDATKEDVTLRAGIPRQLLLQAETTTVAARRLSGFLRRLAERLEGTKELLSSDMKKDFIMHRLPPYHV
PLGLAHSTHVTISTYQNSSWGDFLLDTISGLVFDATKEDVTLRAGIPRQLLLQAETTTVAARRLSGFLRRLAERLEGTKELLSSDMKKDFIMHRLPPYHV
Retrocopy
PLGLAHSTHVTISTYQNSSWGDFLLDTISGLVFDATKEDVTLRAGIPRQLLLQAETTTVAARRLSGFLRRLAERLEGTKELLSSDMKKDFIMHRLPPYHV


Parental protein
GDGTELTTPGGELPRLNSTVTLQFKDHIILTVGPDQDRSDEAQEKMIYIYHSLKNKRETHMMGSEEETEAHGLRFPLSHMEALKQIWNSTTVSVKSLKLA
GDGTELTTPGGELPRLNSTVTLQFKDHIILTVGPDQDRSDEAQEKMIYIYHSLKNKRETHMMGSEEETEAHGLRFPLSHMEALKQIWNSTTVSVKSLKLA
Retrocopy
GDGTELTTPGGELPRLNSTVTLQFKDHIILTVGPDQDRSDEAQEKMIYIYHSLKNKRETHMMGSEEETEAHGLRFPLSHMEALKQIWNSTTVSVKSLKLA


Parental protein
TDEEKESLVLSLWTECLIQVA
TDEEKESLVLSLWTECLIQVA
Retrocopy
TDEEKESLVLSLWTECLIQVA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide