RetrogeneDB ID:
retro_opri_523
Organism:
Location:
scaffold_150714:2-1070 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
93.54 %
Coverage:
61.91 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RNGTT
Parental gene aliases:
No gene alias available
Parental gene description:
RNA guanylyltransferase and 5'-phosphatase [Source:HGNC Symbol;Acc:10073]

Genomic region (view in browser)





>retro_opri_523
ACTCAAGTAACAACTCAACCAAAGCTAGGAGAGGTACAACAGAAGTGTCATCAATTCTGT
GGCTGGGAAGGGTCTGGATTCCCTGGAGCACAGCCCGTTTCCATGGACAAGCAAAATATT
ACACTTTTAGAGCAGAAGCCATATAAAGTAAGCTGGAAAGCAGATGGCACTCGTTACATG
ATGTTGGTTGATGGCACAAATGAAGTCTTTATGATTGATCGAGATAATTCAGTGTTTCAT
GTTTCTAATCTGGAATTTCCATGTCGGAAAGACCTTCAAATCCATTTATCGAATACTCTT
TTGGATGGTGAGATGATTATTGACAGAGTAAACGGACAGGCTCTTCCTAGATATTTGATA
TATGACATCATTAAGTTCAATGCACAGCCAGTTGGAGATTGCGACTTGAATGTCCGCTTG
CAGTGTATAGAACGAGAAATTATAAATCCTCGGCACGAAAAAATGAAGACCGGACTCATT
GACAAGACACGGGAACCATTTAGTGTCAGAAAGAAGCCGTTTTTTGACATTCATACTTCA
AGAAAGCTGCTTGAAGGAAATTTTGCCAAACAAGTCAGTCATGCAGTGGACGGACTTATA
TTTCAGCCCATCGGGAAGTATAAACCTGGTCGGTGTGATGATATTTTGAAGTGGAAACCT
CCCAGTTTGAATTCTGTGGATTTCCGCCTGAAGATAACAAGACTGGGAGGAGAAGGGCTA
CTTCCTCAGAATGCCGGTCTTCTCTATGTTGGAGGCTACAAAAGACCCTTTGCCCAAATC
AAGGTGACAAAAGAGCTCAATCAGTATGACAACAAAATCATAGAATGCAGATTTGAGAAG
AACAGCTGGGTCTTCATGAGACAGAGAACAGACAAAAGTTTTCCGAATGCCTATAACACT
GCCATGGCTGTGTGCAATAGCATCTCAAACCCTGTCACCAAGGAGATGCTGTTTGAGTTC
ATCGACGGATGTGCTGCAGCTTTTCAAGGACAGAAGCAAAAGCATCATCTGAACCCCGAC
ACAGAGCTCATGCCCCCGCCGCCTCCCAAAAGACCGCGCCCTGCCACC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLEQKPYKVSWKADGTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRIHLSNTL
TQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNI.LLEQKPYKVSWKADGTRYMML.DGTNEVFMIDRDNSVFHVSNLEFP.RKDL.IHLSNTL
Retrocopy
TQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNITLLEQKPYKVSWKADGTRYMMLVDGTNEVFMIDRDNSVFHVSNLEFPCRKDLQIHLSNTL


Parental protein
LDGEMIIDRVNGQAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIINPRHEKMKTGLIDKTQEPFGVRNKPFFDIHTSRKLLEGNFAKAVSHEMDGLI
LDGEMIIDRVNGQA.PRYLIYDIIKFNAQPVGDCD.N.RLQCIEREIINPRHEKMKTGLIDKT.EPF.VR.KPFFDIHTSRKLLEGNFAK.VSH..DGLI
Retrocopy
LDGEMIIDRVNGQALPRYLIYDIIKFNAQPVGDCDLNVRLQCIEREIINPRHEKMKTGLIDKTREPFSVRKKPFFDIHTSRKLLEGNFAKQVSHAVDGLI


Parental protein
FQPIGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYERPFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNT
FQPIGKYKPGRCDDILKWKPPSLNSVDFRLKITR.GGEGLLPQN.GLLYVGGY.RPFAQIKVTKEL.QYDNKIIEC.FE.NSWVFMRQRTDKSFPNAYNT
Retrocopy
FQPIGKYKPGRCDDILKWKPPSLNSVDFRLKITRLGGEGLLPQNAGLLYVGGYKRPFAQIKVTKELNQYDNKIIECRFEKNSWVFMRQRTDKSFPNAYNT


Parental protein
AMAVCNSISNPVTKEMLFEFIDRCAAAFQGQKRKHHLDPDAELMPPPPPKRPRPAT
AMAVCNSISNPVTKEMLFEFID.CAAAFQGQK.KHHL.PD.ELMPPPPPKRPRPAT
Retrocopy
AMAVCNSISNPVTKEMLFEFIDGCAAAFQGQKQKHHLNPDTELMPPPPPKRPRPAT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide