RetrogeneDB ID:
retro_opri_540
Organism:
Location:
scaffold_162882:376-853 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
83.65 %
Coverage:
96.3 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
MRPS11
Parental gene aliases:
No gene alias available
Parental gene description:
mitochondrial ribosomal protein S11 [Source:HGNC Symbol;Acc:14050]

Genomic region (view in browser)





>retro_opri_540
GCCGGGGCCCGGGGACTGTGCGATGCGCCCCCGCCGGAGGCAGCGGAGCAGGCGGCCGTG
TGGCGCGGCGGCTTCAGCATCTACCCCCCACTTCCGGGGCAGGAGAGCTCCCTGAGGTGG
GCAGGAAAGAAATTTGAGGAGATCCCGATTGCACACATCAAGGCATCCTATAACAACACA
CAGATCCAGGTCGTATCTGCCACCAACCAATCACTCGCCCGCACATCCTGTGGCACAGAG
GGGTTTCGGAATGCCAAGAAGGCCACCGGTGTCGCCGCACAGACGGCAGCCATAGCTGCA
GCGGCAAAAGCCTCAGGGAAGGGGGTGACACACGTCCGCGTGGTGGTGAAGGGCCTGGGG
CCAGGACACCTGTCAGCCATCAAGGGGCCGACCGTGGGGGGCCTGGAAGTGATTGCCATC
GCAGATAATACCCCTATCCCACACAATGGCTGCCACCCCAACAAGGCCAGGAGGCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AGYWALRSCPWPRVAGRVVA---GARIYPPLPGQESSLRWAGKKFEEIPIAHIKASYNNTQIQVVSATNQSLARTSCGTEGFRNAKKATGVAAQTAAIAA
AG...L...P.P..A........G..IYPPLPGQESSLRWAGKKFEEIPIAHIKASYNNTQIQVVSATNQSLARTSCGTEGFRNAKKATGVAAQTAAIAA
Retrocopy
AGARGLCDAPPPEAAEQAAVWRGGFSIYPPLPGQESSLRWAGKKFEEIPIAHIKASYNNTQIQVVSATNQSLARTSCGTEGFRNAKKATGVAAQTAAIAA


Parental protein
AAKASGKGVTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITDNTPIPHNGCRPKKARRL
AAKASGKGVTHVRVVVKGLGPG.LSAIKG.T.GGLEVI.I.DNTPIPHNGC.P.KARRL
Retrocopy
AAKASGKGVTHVRVVVKGLGPGHLSAIKGPTVGGLEVIAIADNTPIPHNGCHPNKARRL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide