RetrogeneDB ID:
retro_opri_541
Organism:
Location:
scaffold_1637:168243-168792 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
98.36 %
Coverage:
52.29 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
STRAP
Parental gene aliases:
No gene alias available
Parental gene description:
serine/threonine kinase receptor associated protein [Source:HGNC Symbol;Acc:30796]

Genomic region (view in browser)





>retro_opri_541
CTTTGGGATCATGCTACTATGACAGAAGTGAAATCTCTAAATTTTAATATGTCTGTTAGT
AGTATGGAGTATATTCCTGAAGGAGAGATCTTGGTTATAACTTATGGACGATCTATTGCT
TTTCATAGTGCAATAAGTTTGGACCCAATTAAATCCTTCGAAGCTCCTGCAACTATCAAT
TCTGCATCTCTTCATCGTGAGAAAGAGTTTCTTGTTGCAGGTGATGAAGATTTTAAACTT
TATAAGTATGATTATAATAGTGGAGAAGAGTTAGAATCCTACAAAGGACACTTTGGTCCT
ATTCACTGTGTGAGATTTAGTCCTGATGGAGAGCTTTATGCCAGTGGCTCTGAAGATGGA
ACACTGAGGCTGTGGCAAACTATAGTAGGAAAAACATACGGCCTTTGGAAATGTGTGCTT
CCTGAAGACGACAGTGGAGAGTTGGCCAAGCCCAAGATCAATTTCCCAGAGACAGCGGAA
GAGGAGCTAGAAGAAATTACCACGGAGAATTCAGATTCCATCTATTCTTCAACTCCTGAA
GTTAAGGCT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHREKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGP
LWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSA.SLDPIKSFEAPATINSASLHREKEFLVAG.EDFKLYKYDYNSGEELESYKGHFGP
Retrocopy
LWDHATMTEVKSLNFNMSVSSMEYIPEGEILVITYGRSIAFHSAISLDPIKSFEAPATINSASLHREKEFLVAGDEDFKLYKYDYNSGEELESYKGHFGP


Parental protein
IHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEDDSGELAKPKINFPETAEEELEEITTENSDSIYSSTPEVKA
IHCVRFSPDGELYASGSEDGTLRLWQT.VGKTYGLWKCVLPEDDSGELAKPKINFPETAEEELEEITTENSDSIYSSTPEVKA
Retrocopy
IHCVRFSPDGELYASGSEDGTLRLWQTIVGKTYGLWKCVLPEDDSGELAKPKINFPETAEEELEEITTENSDSIYSSTPEVKA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide