RetrogeneDB ID:
retro_opri_545
Organism:
Location:
scaffold_16477:44427-44919 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.34 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SRSF3
Parental gene aliases:
No gene alias available
Parental gene description:
serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785]

Genomic region (view in browser)





>retro_opri_545
ATGCATCGTGATTCCTGTCCATTGAACTGTAAGGTTTACGTAGGTAATCTTGGAAACAAT
GGCAACAAGACTGAATTGGAACGGACCTTTGGCTATTATGGACCACTCCGAAGTGTGTGG
GTTGCAAGAAACCCTCCTGGCTTTGCTTTTGTTGAATTCGAAGACCCCCGGGAAGCAGCT
GATGCTGTCCGCGAGCTAGATGGAAGACCGCTATGTGGCTGTCGTGTGAGAGTGGAGCTG
TCGAATGGCGAAAAAAGAAGTCGAAATCGTGGTCCGCCTCCCTCTTGGGGTCGTCGCCCT
CGAGATGATTATCGTAGGAGAAGCCCTCCACCTCGACGCAGATCTCCGAGAAGGAGAAGC
TTCTCTCGCAGCCGCAGCAGGTCCCTTTCTAGAGACAGGAGAAGAGAAAGATCACTGTCT
CGGGAGAGAAATCACAAGCCGTCCCGCTCTTTCTCTAGGTCTCGGAGCCGATCTAGGTCA
CATGAAAAGAAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRP
MHRDSCPL.CKVYVGNLGNNGNKTELER.FGYYGPLRSVWVARNPPGFAFVEFEDPR.AADAVRELDGR.LCGCRVRVELSNGEKRSRNRGPPPSWGRRP
Retrocopy
MHRDSCPLNCKVYVGNLGNNGNKTELERTFGYYGPLRSVWVARNPPGFAFVEFEDPREAADAVRELDGRPLCGCRVRVELSNGEKRSRNRGPPPSWGRRP


Parental protein
RDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK
RDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRS.E.K
Retrocopy
RDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSHEKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide