RetrogeneDB ID:
retro_opri_553
Organism:
Location:
scaffold_16931:22156-22678 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.16 %
Coverage:
80.75 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_opri_553
ATGGGTAAAGGAGACCCCAACAAGCCGAGGGGCAAGATGTCCTCCTACGCCTTCTTCGTG
CAGACGTGCCGGGAGGAGCACAAGAAGAAGCATCCGGACTCCTCGGTCAACTTCGCCGAG
TTCTCGAAGAAATGCTCGGAGAGATGGAAGACCCTGTCTGCCAAGGAGAAGTCCAAGTTT
GAAGACATGGCCAAAAGCGATAAAGCGCGCTATGACCGGGAGATGAAAAATTACGTCCCC
CCCAAAGGCGACAAGAAGGGAAAGAAGAAAGATCCCAATGCTCCCAAGAGACCGCCATCT
GCCTTCTTCCTGTTTTGCTCTGAACATCGTCCAAAGATCAAAAGCGAACACCCAGGGCTG
TCCATTGGGGATACTGCAAAGAAATTGGGTGAGATGTGGTCTGAACAGTCAGCCAAAGAT
AAACAGCCCTACGAACAGAAGGCAGCTAAGCTAAAGGAGAAGTATGAAAAGGATATTGCT
GCATACCGTGCCAAGGGCAAGAGTGAAGCAGGAAAGAAGGGT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPS
MGKGDP.KPRGKMSSYAFFVQTCREEHKKKHPD.SVNF.EFSKKCSERWKT.SAKEK.KFEDMAK.DKARY.REMK.Y.PPKG..K.K.KDPNAPKRPPS
Retrocopy
MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTLSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPS


Parental protein
DFFLFCSEYRPKIK-EHPGLSIGDMAKKLGEM-CNTAADDKQPYEXXXXXXXXXXXXDIAAYRAKGKPDAAKKG
.FFLFCSE.RPKIK.EHPGLSIGD.AKKLGEM.....A.DKQPYE............DIAAYRAKGK..A.KKG
Retrocopy
AFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide