RetrogeneDB ID:
retro_opri_563
Organism:
Location:
scaffold_17391:3286-3715 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.43 %
Coverage:
62.17 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_opri_563
GTTTGGGAACTTGTCCTGGACAATTGGAAATCAAATGATGAAAAACTTGAGGGCTTAACA
GCCGAATTTGTGAATTTAGCATTTCTCAGTTTAATAAACATAGGCTTGATCTCAGTTTCA
AATCTCTCCAAGCTACCTAAATTGAAAAAACTTGAGCCCAGTGACAATAGAATCTTTGGA
GGTCTCGACATGTTAGCAGAAACACTTCCAAACCTTACATATCTAAACTTGAGTGGAAAT
AAGCTGAAAGATAGTAGCGCCTTGGAGCCTTTGAAAAAGTTGTATTGTCTGAAAAGCCTA
GATCTGTTTAACTGTGAGGTCACTAACCTGAATGACTACCAAGAGAGCGTCTTCCGACTC
CTGCCCCAGCTGACCTACCTAGACGGTTATGATCGAGAGGACCGGGAAGCTCCTGACTCG
GATACTCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VKELVLDNCRSIEGKIEGLTDEFEELEFLSTINVGLTSVANLPKLNKLKKLELSDNRISGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL
V.ELVLDN..S...K.EGLT.EF..L.FLS.IN.GL.SV.NL.KL.KLKKLE.SDNRI.GGL..LAE..PNLT.LNLSGNK.KD.S..EPLKKL..LKSL
Retrocopy
VWELVLDNWKSNDEKLEGLTAEFVNLAFLSLINIGLISVSNLSKLPKLKKLEPSDNRIFGGLDMLAETLPNLTYLNLSGNKLKDSSALEPLKKLYCLKSL


Parental protein
DLFNCEVTNLNDYRENVFELLPQLTYLDGYDRDDKEASDSDAE
DLFNCEVTNLNDY.E.VF.LLPQLTYLDGYDR.D.EA.DSD..
Retrocopy
DLFNCEVTNLNDYQESVFRLLPQLTYLDGYDREDREAPDSDTQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide