RetrogeneDB ID:
retro_opri_566
Organism:
Location:
scaffold_175:221798-222206 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.15 %
Coverage:
74.58 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CNBP
Parental gene aliases:
No gene alias available
Parental gene description:
CCHC-type zinc finger, nucleic acid binding protein [Source:HGNC Symbol;Acc:13164]

Genomic region (view in browser)





>retro_opri_566
GTTTCCAGTTTGTTTCCTCATCTCTTCCAGACATGTCACCGCTGTGGTGAGTCTGGCCAC
CTTGCCAAGGTTTGTGATCTTCAGGAGGATGAAGCCTGTTATAACTGCGGTAGAGGTGGC
TACATTGTCAAGGACTGCAAAAAGGACAAGAGAGAGCGGCAACGGCGTTGCTACAACTGC
AGCAAACCGGGCCACCTGGCTCGTGACTATGACCACGCCAATGAGCAGAAGTGCTATTCG
TGTGGAGAATTTGGACACATTCAGAAAGACTGCACCAAGGTGAAGTGCTATAGGTGTGGC
GAACCTGGCCACATAGCCATCAACTGCAGCAAGACCAGTAAAATCAACTGTTACTGCTGT
GGCGAGTCGGGGCACCTTGCACGGGAATGCATGATCAAGGCCACGGCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VSSSLPDI---CYRCGESGHLAKDCDLQED-ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCG
VSS..P.....C.RCGESGHLAK.CDLQED.ACYNCGRGG.I.KDCK..KRER...CYNC.KPGHLARD.DHA.EQKCYSCGEFGHIQKDCTKVKCYRCG
Retrocopy
VSSLFPHLFQTCHRCGESGHLAKVCDLQEDEACYNCGRGGYIVKDCKKDKRERQRRCYNCSKPGHLARDYDHANEQKCYSCGEFGHIQKDCTKVKCYRCG


Parental protein
ETGHVAINCSKTSEVNCYRCGESGHLARECTIEATA
E.GH.AINCSKTS..NCY.CGESGHLAREC.I.ATA
Retrocopy
EPGHIAINCSKTSKINCYCCGESGHLARECMIKATA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide