RetrogeneDB ID:
retro_opri_575
Organism:
Location:
scaffold_17935:7385-7718 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.74 %
Coverage:
93.5 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_opri_575
GTGGCCGACTGCCAGGTCGTGCGTGTTTCTGGCTTCGAGGAGTTCAACCCGGCCGTGGAG
GAGCACAAGGACAAGACCTTTTCTGGGTCTAAGGACGCCGAAGGGAACAGCTGGTGTCCC
GAGTGTGTGAAGGCTGAGCCAGTCGTGCAGGAGGTGCTGAAGCACACTAGGAAAGGATGT
GTGTTCATCTACTGCCAAGTGGGAGACAGACCTTATTGGAAAGATCCCAATAATGAGTTT
AGGAAAAAGCTGAAGATAACGGCAGTGCCTACACCCCTTAAATATAGAACACCTCAGAAG
CTGGTGGAATCCGAGTGCCTGGAGGCCAGCCTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MANCEVVRVSGFEEFNRAVEEHKDKTVFAYFSGSKDAEGKSWCPDCVKAEPVVQEALKHATKGCVFIYCQVGDRPYWKDPNNEFRKKLKITAVPTLLKYG
.A.C.VVRVSGFEEFN.AVEEHKDKT....FSGSKDAEG.SWCP.CVKAEPVVQE.LKH..KGCVFIYCQVGDRPYWKDPNNEFRKKLKITAVPT.LKY.
Retrocopy
VADCQVVRVSGFEEFNPAVEEHKDKT----FSGSKDAEGNSWCPECVKAEPVVQEVLKHTRKGCVFIYCQVGDRPYWKDPNNEFRKKLKITAVPTPLKYR


Parental protein
TXXXXXXSECLEASL
T......SECLEASL
Retrocopy
TPQKLVESECLEASL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide