RetrogeneDB ID:
retro_opri_581
Organism:
Location:
scaffold_1817:51869-52346 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.86 %
Coverage:
82.81 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SUSD3
Parental gene aliases:
No gene alias available
Parental gene description:
sushi domain containing 3 [Source:HGNC Symbol;Acc:28391]

Genomic region (view in browser)





>retro_opri_581
CAGGAGTCCCTGGGCTTCAAGGTGGCCGTGACTGCCTCCATCGTGAGCTGTGCTATCATC
CTGCTCATGTCCGTGGCCTTCCTCACCTGCTGTCTCCTTAAATGCATGAAGAGGAGTGAG
CAGCGGCGTTCTAACAGGTCAACCCAGCTGTGGCACCAGCTGAGAGGTGAGGACCTGGAG
ACAGTGCAGGCTGCGTATCTGGGCATCAAGGGCCTCAACTTCAACAACAGCAACAGCAGC
CCAAGGAACCAGCGTGCTCAAGCGCATGACAATCACGGCTTCACCAGAGAGCTCGAGGGC
ATCAGAGACCTGGACGGTGTGACCCCCAGCGTGAACAAGGACCTCAGGAGCCTTGCACTT
GGTGCTGTGAGTCTCAGCGGCCCCTCCAGCGGCTCCCACGCCTGTGTGATGGTGCACACA
GAACAACTGGGGCAGACCCTCTCTGCACCCGGGCCAAGCACAGCTCACTTTCCAGGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QESLGFKVAVIASIVSCAIILLMSVAFLTCCLLKCMKRSEQRRSNRSTQLWHQLRGEDLETVQAAYLGIKGLNFNNSNSSPRNQRAQAHDNHSFTRELEG
QESLGFKVAV.ASIVSCAIILLMSVAFLTCCLLKCMKRSEQRRSNRSTQLWHQLRGEDLETVQAAYLGIKGLNFNNSNSSPRNQRAQAHDNH.FTRELEG
Retrocopy
QESLGFKVAVTASIVSCAIILLMSVAFLTCCLLKCMKRSEQRRSNRSTQLWHQLRGEDLETVQAAYLGIKGLNFNNSNSSPRNQRAQAHDNHGFTRELEG


Parental protein
IRDLDGVTPSVDKDLRSLALGAVSPSGPSSSSHACVMVHTEQLGQTLSAPGPSTAHFPG
IRDLDGVTPSV.KDLRSLALGAVS.SGPSS.SHACVMVHTEQLGQTLSAPGPSTAHFPG
Retrocopy
IRDLDGVTPSVNKDLRSLALGAVSLSGPSSGSHACVMVHTEQLGQTLSAPGPSTAHFPG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide