RetrogeneDB ID:
retro_opri_590
Organism:
Location:
scaffold_1840:9255-9834 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
82.9 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RHOA
Parental gene aliases:
No gene alias available
Parental gene description:
ras homolog family member A [Source:HGNC Symbol;Acc:667]

Genomic region (view in browser)





>retro_opri_590
ATGGCTGCCCTCCGCAAGAAGCTGGTGGTCGTGGGGGCCGGCGCTTGCGGCAAGACGAGC
CTGCTGGTGGTGTTCAGCCGCGACTCCTTCCCGGAGGAGTACGTGCCCACCGTGTTTGAG
AACTACGTGGCCGACGTGGAGGTGGACGGGAAGCGTGTGGAGCTGGCCCTGTGGGACACA
GCGGGCCAGGAGGAGTACGACCGCCTGCGGCCCCTGTCTTACCCGGACACCGACGTCATC
CTCATGTGCTTCTCCATCAGCAGTCCCGACAGTCTGGAAAACATCCCGGTCAAGTGGGCG
CCCGAGGTGCGGCACTTCTGCCCCAGCGTGCCCATCGTCCTGGTGGGCAACAAGAAGGAT
CTCCGCCACGATGAGGGCACCAGGCGGGCGCTGGCGGCCTGGAAGCAGGAGCCGGTGAGG
CCCGAGGCAGGCAGGGACATGGCCGGCAGGGTCGGCGCCTTCGGGTACCTGGAGTGCTCC
GCCAAGACCAAGGAGGGCGTGAGGGAGGTGTTCGAGCTGGCCACGCGAGCCGCCCTGCAG
GCCAGGCGTGGCAGGAAGCGCTGGCGGTGCCTGGTCCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWT
MAA.RKKLV.VG.GACGKT.LL.VFS.D.FPE.YVPTVFENYVAD.EVDGK.VELALWDTAGQE.YDRLRPLSYPDTDVILMCFSI.SPDSLENIP.KW.
Retrocopy
MAALRKKLVVVGAGACGKTSLLVVFSRDSFPEEYVPTVFENYVADVEVDGKRVELALWDTAGQEEYDRLRPLSYPDTDVILMCFSISSPDSLENIPVKWA


Parental protein
PEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLVL
PEV.HFCP.VPI.LVGNKKDLR.DE.TRR.LA..KQEPV.PE.GRDMA.R.GAFGY.ECSAKTK.GVREVFE.ATRAALQARRG.K...CLVL
Retrocopy
PEVRHFCPSVPIVLVGNKKDLRHDEGTRRALAAWKQEPVRPEAGRDMAGRVGAFGYLECSAKTKEGVREVFELATRAALQARRGRKRWRCLVL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide