RetrogeneDB ID:
retro_opri_598
Organism:
Location:
scaffold_1878:170611-171136 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.43 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CBX3
Parental gene aliases:
No gene alias available
Parental gene description:
chromobox homolog 3 [Source:HGNC Symbol;Acc:1553]

Genomic region (view in browser)





>retro_opri_598
CAAAAAATGGGAAAGAAGCAGAATGGAAAGAGCAAAAAGGTCGAAGAAGCAGAGCCTGAA
GAGTTTGTGGTGGAGAAGGTGTTGGACCACCGTGTGGTCAATGGGAAGGTGGAGTACTTT
CTGAAGTGGAAGGAATTCACAGATGCTGACACCACTTGGGAACCTGAAGAAAATCTAGAT
TGTCCAGAGTTAATTGAAGCATTTCTTAATTCTCAAAAAGCTGGTAAAGAAAAAGATGGT
GCCAAAAGAAAATCCTTATCTGACAGTGAATCTGATGCCAGTAAATCAAAGAAGAAAAGA
GATGCTGCTGACAAACCGAGGGGCTTTGCCAGGGGTCTTGATCCTGAACGAATAATTGGT
GCCACAGATAGCAGTGGGGAGTTGATGTTTCTCATGAAGTGGAAAGATTCAGATGGAGCT
GACTTGGTGCTGGCAAAAGAAGCAAATATGAAATGTCCTCGGATTGTAATTGCTTTTTAT
GAAGAGGGACCAACTTGGCATTCTTGTCCGGAAGATGAAGCTCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEKDGAKRKSLSDSESDDSKSKKKR
QKMGKKQNGKSKKVEEAEPEEFVVEKVLD.RVVNGKVEYFLKWK.FTDAD.TWEPEENLDCPELIEAFLNSQKAGKEKDGAKRKSLSDSESD.SKSKKKR
Retrocopy
QKMGKKQNGKSKKVEEAEPEEFVVEKVLDHRVVNGKVEYFLKWKEFTDADTTWEPEENLDCPELIEAFLNSQKAGKEKDGAKRKSLSDSESDASKSKKKR


Parental protein
DAADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEAQ
DAADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSD.ADLVLAKEANMKCP.IVIAFYEE..TWHSCPEDEAQ
Retrocopy
DAADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDGADLVLAKEANMKCPRIVIAFYEEGPTWHSCPEDEAQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide