RetrogeneDB ID:
retro_opri_622
Organism:
Location:
scaffold_19702:42052-42574 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
85.63 %
Coverage:
99.43 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RAN
Parental gene aliases:
No gene alias available
Parental gene description:
RAN, member RAS oncogene family [Source:HGNC Symbol;Acc:9846]

Genomic region (view in browser)





>retro_opri_622
ACGCTGGGCGTCGAGGTGCACCCGCTTGTGTTCCACACCAACCGGGGGCCCATCAAGTTC
AACGTGTGGGACACACCCGGCCAGGAGAAGTTCAGCGGCCTGCGGGATGGCTACTACATC
CAAGCCCAGTGTGCCATCATCATGTTTGACATGACGTCCAGAGTGACCCACAGGAACGTG
CCCAACTGGCAGAGAGACCTGATGCGTGAGTGTAAGAACATCCCCATTGTGCTGTGTGGC
AACAAGGTGGATATCAAGGACAGGAAAGTGAAGGCAAAATTTATTGTCTTCCACCGAAAG
AAGAATCTCCAGTACTATGACATTTCTGCCAAAAGTAGCTACAACTTTGAGAAGCCCTTC
CTCTGGCTTGCTAGGAAGCCCATTGGAGACCCCAACCTGGAGTTTGTTGCCATGCCTGCT
CTCACCCTGCCAGAGGTGGTCATGGACCCGGCATTGGCGGCGCAGGATGAGCATGACCTA
GAGGTTGCTCAGACAACCACCCTCCCGGATGAGGATGATGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TLGVEVPPLV-STNRGSIKFNRLDTARQEKFGGLRGGSYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK
TLGVEV.PLV..TNRG.IKFN..DT..QEKF.GLR.G.YIQAQCAIIMFD.TSRVT..NVPNW.RDL.R.C.NIPIVLCGNKVDIKDRKVKAK.IVFHRK
Retrocopy
TLGVEVHPLVFHTNRGPIKFNVWDTPGQEKFSGLRDGYYIQAQCAIIMFDMTSRVTHRNVPNWQRDLMRECKNIPIVLCGNKVDIKDRKVKAKFIVFHRK


Parental protein
KNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD
KNLQYYDISAKS.YNFEKPFLWLARK.IGDPNLEFVAMPAL..PEVVMDPALAAQ.EHDLEVAQTT.LPDEDDD
Retrocopy
KNLQYYDISAKSSYNFEKPFLWLARKPIGDPNLEFVAMPALTLPEVVMDPALAAQDEHDLEVAQTTTLPDEDDD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide