RetrogeneDB ID:
retro_opri_631
Organism:
Location:
scaffold_20365:18113-19013 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.0 %
Coverage:
56.6 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
AHCYL1
Parental gene aliases:
No gene alias available
Parental gene description:
adenosylhomocysteinase-like 1 [Source:HGNC Symbol;Acc:344]

Genomic region (view in browser)





>retro_opri_631
GTCGCGGACATCGGCTTGGCTGCATGGGGACGCAAGGCCCTGGACATTGCCGAGAACGAG
ATGCCAGGCCTGATGCGCATGCGGGAGATGTACTCGGCATCCAAGCCACTGAAGGGTGCC
CGCATTGCCGGCTGCTTGCACATGACTGTGGAGACTGCTGTCCTCATCGAGACCCTTGCT
GCCCTGGGTGCTGAGGTACAGTGGTCTAGCTGCAATATCTTTTTCACCCAGGACCATGCA
GCGGCTGCCGTTGCCAAGGCTGGCATTCCAGTGTACTCCTGGAAGGGCGAAACAGACGAG
GAGTGCCTGTGGTGCATTGAGCAGACACTCTACTTTAAGGACGGGCCCCTCAACATGATC
CTGGATGATGGTGGCGACCTCACCAACCTTATCCACACCAAGTACCCCCAGCTCCTGTCA
GGCATCAGAGGCATCTCTGAGGAGACCACGACTGGGGTCCACAACCTCTACAAGATGATG
GCTAATGGGGTTCTGAAGGTGCCCGCCATCAATGTCAATGACTCTGTTACCAAGAGCAAG
TTTGACAACCTGTACGGCTGCCGGGAGTCCCTCATAGATGGCATCAAACGGGCTACAGAT
GTGATGATCGAAGGCAAGGTGGCAGTGGTAGCAGGCTATGGAGATGTGGGCAAAGGCTGT
ACCCAGGCCCTGAGGGGTTTTGGGGCCCATGTCATCATCACCGAGATCGACCCCATCAAC
GCACTGCAGGCTGCCATGGAGGGCTATGAAGTGACCACCATGGATGAAGCCTGTAAAGAG
GGCAACATCTTTGTCACCACCACAGGCTGTGTGGACATCATCCTTGGGCGGCACTTTGAG
CAGATGAAAGATGATGCCATTGTGTGTAACATCGGACACTTCGATGTGGAGATTGATGTC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VKNIKQAEFGRREIEIAEQDMSALISLRKRAQGEKPLAGAKIVGCTHITAQTAVLIETLCALGAQCRWSACNIYSTQNEVAAALAEAGVAVFAWKGESED
V..I..A..GR....IAE..M..L...R......KPL.GA.I.GC.H.T..TAVLIETL.ALGA...WS.CNI..TQ...AAA.A.AG..V..WKGE...
Retrocopy
VADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLAALGAEVQWSSCNIFFTQDHAAAAVAKAGIPVYSWKGETDE


Parental protein
DFWWCIDRCVNMDGWQANMILDDGGDLTHWVYKKYPNVFKKIRGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTD
...WCI...........NMILDDGGDLT.....KYP.....IRGI.EE..TGVH.LY.....G.L.VPA.NVNDSVTK.KFDNLY.CRES..DG.KR.TD
Retrocopy
ECLWCIEQTLYFKDGPLNMILDDGGDLTNLIHTKYPQLLSGIRGISEETTTGVHNLYKMMANGVLKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATD


Parental protein
VMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDV
VM..GK..VV.GYG.VGKGC..AL...GA.V.ITEIDPI.ALQA.M.G..V....E.........T.TG........H...MK...IVCN.GH...EIDV
Retrocopy
VMIEGKVAVVAGYGDVGKGCTQALRGFGAHVIITEIDPINALQAAMEGYEVTTMDEACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide