RetrogeneDB ID:
retro_opri_637
Organism:
Location:
scaffold_21045:12493-13174 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.59 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
NUDT21
Parental gene aliases:
No gene alias available
Parental gene description:
nudix (nucleoside diphosphate linked moiety X)-type motif 21 [Source:HGNC Symbol;Acc:13870]

Genomic region (view in browser)





>retro_opri_637
ATGTCTGTGGTACCGCCCAATCGCTCGCAGACCGGCTGGCCCCGAGGGGTCAACCAGTTC
GGCAACAAGTACATCCGGCAGACCAAGCCCCTCACCCTGGAGCGCACCATCAACCTTTAC
CGACTTACCAATTACGCTTTTGGGACCAAAGAGCCTGTCTATGAGAAGGACAGTTCCGTC
GCAGCCAGATTTCAGCGCATGAGGGAAGAATTCGATAAGATTGGAATGAGGAGGACTGTG
GAAGGGGTTCTGATTGTACACGAGCACCGACTACCACACGTGCTACTGCTGCAGCTGGGA
ACAACTTTCTTCAAATTGCCTGGTGGTGAACTTAATCCAGGAGAAGATGAAGTTGAAGGA
CTAAAACGCTTAATGACAGAGATACTAGGCCGTCAAGATGGAGTCCTGCAAGACTGGGTC
ATTGATGACTGCATTGGTAACTGGTGGAGACTGAATTTTGAACCTCCGCAGTACCCATAT
ATTCCTGCACATGTTACAAAGCCTAAGGAGCATAAGAAGTTGTTTCTGGTTCAACTTCAA
GAGAAAGCCTTGTTTGCAGTCCCTAAAAATTACAAGCTGGTAGCTGCACCTTTGTTTGAA
TTGTATGACAATGCACCAGGATATGGACCCATCATTTCTAGTCTTCCTCAACTGTTGAGC
AGGTTCAATTTTATATACAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSVVPPNRSQTGWPRGVNQFGNKYIQQTKPLTLERTINLYPLTNTL--DKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLG
MSVVPPNRSQTGWPRGVNQFGNKYI.QTKPLTLERTINLY.LTN.....KEP.YEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLG
Retrocopy
MSVVPPNRSQTGWPRGVNQFGNKYIRQTKPLTLERTINLYRLTNYAFGTKEPVYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLG


Parental protein
TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFE
TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWR.NFEPPQYPYIPAH.TKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFE
Retrocopy
TTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWRLNFEPPQYPYIPAHVTKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFE


Parental protein
LYDNAPGYGPIISSLPQLLSRFNFIYN
LYDNAPGYGPIISSLPQLLSRFNFIYN
Retrocopy
LYDNAPGYGPIISSLPQLLSRFNFIYN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide