RetrogeneDB ID:
retro_opri_641
Organism:
Location:
scaffold_21168:6157-6655 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
98.8 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PPIL1
Parental gene aliases:
No gene alias available
Parental gene description:
peptidylprolyl isomerase (cyclophilin)-like 1 [Source:HGNC Symbol;Acc:9260]

Genomic region (view in browser)





>retro_opri_641
ATGGCGGCTATTCCCCCGGACTCCTGGCAGCCACTCAACGTTTACTTGGAGACCAGCATG
GGCATCATCGTATTGGAGCTGTACTGGAAGCATGCCCCAAAGACCTGCAAGAACTTTGCT
GAGCTGGCGCGTCGAGGCTACTACAACGGCACCAAATTCCACAGAATCATCAAAGACTTC
ATGATCCAGGGAGGCGACCCGACAGGGACAGGTCGAGGTGGTGCATCCATCTATGGCAAA
CAGTTTGAAGATGAACTTCATCCTGACTTGAAATTCACTGGGGCTGGCATTCTCGCAATG
GCCAATGCTGGGCCAGACATCAACGGCAGCCAGTTCTTTGTGACGCTCGCTCCCACCCAG
TGGCTGGATGGCAAGCACACCATTTTTGGCCGAGTGTGCCAGGGTATCGGAATGGTGAAT
CGAGTGGGAATGGTGGAAACCAACTCCCAGGACCGCCCTGTGGACGATGTGAAGATCATT
AAGGCATACCCTTCCGGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAAIPPDSWQPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAM
MAAIPPDSWQP.NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAM
Retrocopy
MAAIPPDSWQPLNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAM


Parental protein
ANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSG
ANAGPD.NGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSG
Retrocopy
ANAGPDINGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide