RetrogeneDB ID:
retro_opri_645
Organism:
Location:
scaffold_2136:148495-148720 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.74 %
Coverage:
67.54 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPLP1
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein, large, P1 [Source:HGNC Symbol;Acc:10372]

Genomic region (view in browser)





>retro_opri_645
CATGTGACACTCTTCTGGTCTGGCTTGTTGGGCAAGATGCTGGCCAACAGCAACAACCGG
AGGCTCATTTGCAAAGTTGGGGCTGGTAGACCTCCAGAGGCAGGTGCCACCCCAGCAGGG
TACCCTGTGCCCCTGGTGGTTGCCGCTTCAGCTGAGAAGGAAGCAGAAACAAAGAAAGAA
GAGCCTGAGGAGTCTGATGACAACAGGGGGCTCTGGCTTTTTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPAAAAAPAEEKKVEAKKEESEESDDDMGFGLFD
.V..FW.GL..K.LAN.N...LIC.VGAG.P.P.AGA.PAG.P.P...AA.AE.K..E.KKEE.EESDD..G..LFD
Retrocopy
HVTLFWSGLLGKMLANSNNRRLICKVGAGRP-PEAGATPAGYPVPLVVAASAE-KEAETKKEEPEESDDNRGLWLFD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide