RetrogeneDB ID:
retro_opri_652
Organism:
Location:
scaffold_2199:231049-231457 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.12 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
IMMP2L
Parental gene aliases:
No gene alias available
Parental gene description:
IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:HGNC Symbol;Acc:14598]

Genomic region (view in browser)





>retro_opri_652
ATGGCCCAGTCTCAAGGATGGGTGAAAAGATACTGCACGGCCTTTTGCAAAGGCTTCTTC
GTGGCAGTGCCCGTGGCAGTGACTTTGCTGGACCGAGTTGCCTGCGTGGCGAGAGTGGAA
GGCACATCAATGCAACCTTCTTTGAATCCTGGGGGGAGCCGGTCACCTGATGTGGTACTT
TTGAACCACTGGAAAGTGAGGAATTTTGAAGTTCAACGTGGTGACATTGTGTCGTTGGTG
TCTCCTAAAAACCCACAGCAGAAAATCATTAAGCGAGTGATTGCTCTTGAAGGAGATATT
ATCAGAACCATTGGACACAAAAACCGGTATGTCAGAGTCCCCCGTGGTCACATCTGGGTC
GAAGGTGATCACCATGGACACAGTTTTGACAGTAATTCCTTTGGGCCC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAQSQGWVKRYFKAFCKGFFVAVPVAVTVLDRVACVARVEGASMQPCLNPGGSQSSDVVLLNHWKVRNFEVQRGDIVSLVSPKNPQQKIIKRVIALEGDI
MAQSQGWVKRY..AFCKGFFVAVPVAVT.LDRVACVARVEG.SMQP.LNPGGS.S.DVVLLNHWKVRNFEVQRGDIVSLVSPKNPQQKIIKRVIALEGDI
Retrocopy
MAQSQGWVKRYCTAFCKGFFVAVPVAVTLLDRVACVARVEGTSMQPSLNPGGSRSPDVVLLNHWKVRNFEVQRGDIVSLVSPKNPQQKIIKRVIALEGDI


Parental protein
IRTIGHKNRYVKVPRGHIWVEGDHHGHSFDSNSFGP
IRTIGHKNRYV.VPRGHIWVEGDHHGHSFDSNSFGP
Retrocopy
IRTIGHKNRYVRVPRGHIWVEGDHHGHSFDSNSFGP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide