RetrogeneDB ID:
retro_opri_658
Organism:
Location:
scaffold_22438:10041-10536 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.36 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL12
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L12 [Source:HGNC Symbol;Acc:10302]

Genomic region (view in browser)





>retro_opri_658
ATGCCACCCAAGTTCGACCCTAACGAGATTAAAGTCGTGTACCTGCGGTGCGCCGGCGGC
AAGGTGGGTGCCACGTCCGCCCTAGCCCCCAAGATCGGCCCCCTGGGCCTGTCTCCGAAG
AAGGTGGGAGATGACATTGCCAAGGCCACCGGGGACTGGAAGGGCTTGTGGATCACGGTG
AAGCTGACCATCCAGAACCGACAAGCGCAGATCGAGGTGGTGCCGTCGGCCTCTGCTCTG
ATCAGCAAGGCCCTCAAGGAGCCGCCCAGGGACCGCAAGAAGCAGAAGAACATCAAACAC
AGCGGGAACATCACATTTGATGAAATTGTCAACATCGCCCGGCAGATGCGCCACCGATCC
TTAGCCAGAGAACTTTCCGGAACCATCAAAGAGATTCTGGGGACGGCCCAGCCGGTGGGC
TGCAATGTGGATGGCCGCCACCCACACGACATCATAGATGACATCAACAGTGGTGCAGTG
GAATGCCCAGCTAGC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALII-ALKEPPRDRKKQKNIKH
MPPKFDPNEIKVVYLRC.GG.VGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGL.ITVKLTIQNRQAQIEVVPSASALI..ALKEPPRDRKKQKNIKH
Retrocopy
MPPKFDPNEIKVVYLRCAGGKVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLWITVKLTIQNRQAQIEVVPSASALISKALKEPPRDRKKQKNIKH


Parental protein
SGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECPAS
SGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQ.VGCNVDGRHPHDIIDDINSGAVECPAS
Retrocopy
SGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQPVGCNVDGRHPHDIIDDINSGAVECPAS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide