RetrogeneDB ID:
retro_opri_7
Organism:
Location:
scaffold_112666:322-1219 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.36 %
Coverage:
99.29 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_opri_7
ATGAAGTCCCGTCCCGGCCTGCAGGCCGCCATCGACCTCACAGCGGGCGCCATCGGGGGC
ACAGCGTGCGTCCTCACCGGGCAGCCGTTTGACACGATGAAAGTCAAGATGCAGACCTTC
CCCCGCCTGTACTCGGGCCTCATCGACTGTTTCCTCAAGACCTACACTCACGTGGGCTTG
CGAGGCCTCTACAGGGGCACGGGCCCCGCGCTGCTGGCCTTCGTGGCGCAAAACTCTGTC
CTCTTCATGTGCTATGGTTTCTGCAAACAGTTTGTCAGGACAGTGGCCGGCCTGGACAAA
AAGGCGAAACTGAACGACTTGCAGTCCGCGGCCGCAGGCTCCTTCGCCTCAGCTTTCGCA
GCGCTGGCCCTCTGCCCCACTGAGCTGGTCAAGTGCCGGCTGCAGACCATGCACGAACTG
GAGATGTTGGGGAAGATAACCAAGAGCCACAACACCATCTTGTCAGTGGTGAGGAGTATT
CTGCAGAAGGATGGCTTCTGGGGCTTCTACCACGGCCTGTCCAGCACTCTGCTTCAAGAA
GTTCCTGGCTACTTCTTCTTCTTTGGTGGCTATGAACTGAGCCGGTCGTTTTTTGCCGCA
GGCAAATCCAAAGATGAACTGGGCCCTGTCCCCTTGATGTTAAGTGGCGGAGTCGCCGGA
GTTGCCCTTTGGCTCATCATCTTCCCAGTGGATTGTATTAAGTCCAGGATTCAAGTTCTT
TCCATGTACGGAAAACAGGCAGGATTCTTGGGAACTCTTGTAAGTGTGGTCAAAAATGAA
GGAATAGCAGCCTTATACTCTGGACTGAAACCTACCATGGTTCGAGCCATCCCTGCCAAC
GGGGCACTGTTTTTGGCTTATGAATACAGCAGGAAGATGATGATGAGCCAGCTGGAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GTACVLTGQPFDTMKVKMQTFPDLYRGLSDCCLKTYTQVGFRGFYRGTSPALIANIAENSVLFMCYGFCQQVVRRVVGLDKQAKLSDMQNAAAGSFASAF
GTACVLTGQPFDTMKVKMQTFP.LY.GL.DC.LKTYT.VG.RG.YRGT.PAL.A..A.NSVLFMCYGFC.Q.VR.V.GLDK.AKL.D.Q.AAAGSFASAF
Retrocopy
GTACVLTGQPFDTMKVKMQTFPRLYSGLIDCFLKTYTHVGLRGLYRGTGPALLAFVAQNSVLFMCYGFCKQFVRTVAGLDKKAKLNDLQSAAAGSFASAF


Parental protein
AALVLCPTELVKCRLQAMYEMQTSGKVASSQNTVWSVVKSILRKDGPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGTSKDELGPVPLMLSGGVG
AAL.LCPTELVKCRLQ.M.E....GK...S.NT..SVV.SIL.KDG..GFYHGLSSTLL.EVPGYFFFFGGYELSRSFFA.G.SKDELGPVPLMLSGGV.
Retrocopy
AALALCPTELVKCRLQTMHELEMLGKITKSHNTILSVVRSILQKDGFWGFYHGLSSTLLQEVPGYFFFFGGYELSRSFFAAGKSKDELGPVPLMLSGGVA


Parental protein
GICLWLVVYPVDCIKSRIQVLSMSGKQAGFIGTFISIVKSEGIAALYSGLKPTMIRAFPANGALFLAYEYSRKLMMSQLE
G..LWL...PVDCIKSRIQVLSM.GKQAGF.GT..S.VK.EGIAALYSGLKPTM.RA.PANGALFLAYEYSRK.MMSQLE
Retrocopy
GVALWLIIFPVDCIKSRIQVLSMYGKQAGFLGTLVSVVKNEGIAALYSGLKPTMVRAIPANGALFLAYEYSRKMMMSQLE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide