RetrogeneDB ID:
retro_opri_701
Organism:
Location:
scaffold_2493:39764-39989 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
85.33 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
LSM5
Parental gene aliases:
No gene alias available
Parental gene description:
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Source:HGNC Symbol;Acc:17162]

Genomic region (view in browser)





>retro_opri_701
CTGGTGGATAAATGCAGAGGCTCGAGAATCCACACCGTGATGGAGAACGAGAAAGAAACT
GTCAGCACGCTTCTGGGTTTTGATGACTCAGTCAATATGGTATTAGAAGATGTCACTGAA
TTTGAAATCACACCAGAAGGAAGAAGGATCACTAAATTAGATCAAATTTTGCTAAATCGA
AATAATATAACAATGCTGGTGCCCAGAGGAGAAGGGCATGAAGTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGEGPEV
LVDKC.GSRIH.VM...KE.V.TLLGFDD.VNMVLEDVTEFEITPEGRRITKLDQILLN.NNITMLVP.GEG.EV
Retrocopy
LVDKCRGSRIHTVMENEKETVSTLLGFDDSVNMVLEDVTEFEITPEGRRITKLDQILLNRNNITMLVPRGEGHEV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide