RetrogeneDB ID:
retro_opri_717
Organism:
Location:
scaffold_256:223272-223731 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.1 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS27A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]

Genomic region (view in browser)





>retro_opri_717
CAGATCTTCGTCAAGACTCTTACAGGCAAGACCATCACCCTCGAGATTGAGCCCTCAGAT
ACGATAGAACATGTAAAAGCCAAAATCCAGGAAAAGGAAGGCATTCCTCCGGATCAGCAA
AGACTGACCTTTGCTGACAAGCAGCTGGAAGATGGCCGAAGTTTATCTGACTACAACCTT
CAGAAGGAGTCCACTCTGCATCTGGTGCTGAGACTCCATGGTGGTGCCAAGAAAAGGAAG
AAGTCGTACACCACTCCCAAGAAGAACAAGCACAAGAGGAAGAAGGTTAAGCTGGCTGTC
CTCAAGTACTACAAGGTGGACGAGAACGGTAAAACCAACCACCTGCGTCGCGAGCGCCCC
TCTGACAAGTGCTGTGCCCTGTTCATGGCAGGCCACTTCGACAGGCATTACTGCGGCAAG
TGCTGTCTGACCTACTGCTTCAACAAGCCTGAAGACAAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QIF-QTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLA
QIF..TLTGKTITLE.EPSDTIE.VKAKIQ.KEGIPPDQQRL.FA.KQLEDGR.LSDYN.QKESTLHLVLRL.GGAKKR.KKSYTTPKKNKHKRKKVKLA
Retrocopy
QIFVKTLTGKTITLEIEPSDTIEHVKAKIQEKEGIPPDQQRLTFADKQLEDGRSLSDYNLQKESTLHLVLRLHGGAKKR-KKSYTTPKKNKHKRKKVKLA


Parental protein
VLKYYKVDENGKISRLRRECPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
VLKYYKVDENGK...LRRE.PSD.C.A..FMA.HFDRHYCGKCCLTYCFNKPEDK
Retrocopy
VLKYYKVDENGKTNHLRRERPSDKCCA-LFMAGHFDRHYCGKCCLTYCFNKPEDK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide