RetrogeneDB ID:
retro_opri_721
Organism:
Location:
scaffold_2588:87819-88266 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.97 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_opri_721
ATGGCGGCTCAAATTCCCATCGTGGCCACCACTTCCACTCCCGGGATAGCCCGCAGCAGT
AAGAAGAGGCCTGCCAGCCCTTCCCACAACGGCAGCAGCGGCAGAGCCTACAGTGCCAGT
AAGAAGAAAAAAGTGTCTGGCTCTAGCTTCGCGCAGGGTATCGGCATGGATGCCATGAGT
GAGAGTAAAATGGTGCCCTCTGACTTTAACGCCGGACCTATGGAAAAAGCTGCCAAACCT
TTGCCGTTTAAGGATCTCAACTTTGTGCACTCTGGCCATGGTGGTGCAGTAGCTGGCAAG
AAAAACAGAACCTGGAAGCACCTGAAACAAATTCTGGCTGCTGAAAGGGCCTTACTGTGG
CCGCTGAACGACCCTAACTACTTCAGTATTGATGCTCCTCCATCCTTTAAGCCAGCTAAG
AAGTATTCTGATGTTTCAGGCCTTCTT


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAAQIPIVATTSTPGIARSSKKRPASPSHNGSSGGAYSASKKKKVSGSSFAQGIGMDAMTESKMVPSDFNAGPMEKAAKPLPFKDPNFVHSGHGGAVAGK
MAAQIPIVATTSTPGIARSSKKRPASPSHNGSSG.AYSASKKKKVSGSSFAQGIGMDAM.ESKMVPSDFNAGPMEKAAKPLPFKD.NFVHSGHGGAVAGK
Retrocopy
MAAQIPIVATTSTPGIARSSKKRPASPSHNGSSGRAYSASKKKKVSGSSFAQGIGMDAMSESKMVPSDFNAGPMEKAAKPLPFKDLNFVHSGHGGAVAGK


Parental protein
KNRTWKNLKQILAAERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLL
KNRTWK.LKQILAAERAL.W.LNDPNYFSIDAPPSFKPAKKYSDVSGLL
Retrocopy
KNRTWKHLKQILAAERALLWPLNDPNYFSIDAPPSFKPAKKYSDVSGLL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide