RetrogeneDB ID:
retro_opri_742
Organism:
Location:
scaffold_27241:11298-11877 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.42 %
Coverage:
53.83 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PCBP1
Parental gene aliases:
No gene alias available
Parental gene description:
poly(rC) binding protein 1 [Source:HGNC Symbol;Acc:8647]

Genomic region (view in browser)





>retro_opri_742
ATGGACACCGGTATGATTGAAGGTGAATTAAATGTCACTCTCACTATTCGGCTACTTATG
CATGGCAAGGAAGTTGGCAGTATCATTGGAAAGAAAGGAGAATCTGTTAAGAAGATGCGC
GAGGAGAGCGGTGCACGGATCAACATCTCAGAGGGGAATTGTCCTGAGAGAATTATCACT
TTGGCTGGACCCACTAATGCCATCTTCAAAGCCTTTGCTATGATCATTGACAAACTGGAA
GAGGACATCAGCAGCTCTATGACCAACAGCACAGCTGCCAGCCCACCTCCAGTTACCCTG
AGGCTTGTGGTTCCTGCGAGTCAGAGTGGCTCTCTCATTGGAAAGGGTGGTTGCAAGATC
AAGGAAACACGAGAGAGTACAGGGGCTCAGGTGCAGGTGGCAGGGGACATGCTCCCCAAC
TCAACTGAGCGCGCCATCACTATTGCTGGCATTCCTCAGTCGATCATTGAGTGTGTTAAA
CAGATCTGCATGGTCATATTGGAGTCCCCCCCGAAGGGTGTGACCATCCCGTACCGGCCC
AAGCCGTCCAGTTCTCCGGTCATCTTTGCAGGTGGTCAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTL
MDTG.IEG.LNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAAS.PPVTL
Retrocopy
MDTGMIEGELNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASPPPVTL


Parental protein
RLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPSSSPVIFAGGQ
RLVVPASQ.GSLIGKGGCKIKE.RESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQIC.V.LE....SPPKGVTIPYRPKPSSSPVIFAGGQ
Retrocopy
RLVVPASQSGSLIGKGGCKIKETRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICMVILE----SPPKGVTIPYRPKPSSSPVIFAGGQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide