RetrogeneDB ID:
retro_opri_746
Organism:
Location:
scaffold_27721:5860-6136 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.37 %
Coverage:
56.71 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CCDC12
Parental gene aliases:
No gene alias available
Parental gene description:
coiled-coil domain containing 12 [Source:HGNC Symbol;Acc:28332]

Genomic region (view in browser)





>retro_opri_746
GCGGCCGCGGCCAGTGTGGGCCAGCTAAAAGAGGAGGCTCTGCAGCGAAAGAAAAGGCTG
AGGGCCCTGCAGGAGAAAGCCGGACACAAGGACAAGGAAGACGGGGAACCCAAGACCAAG
CGGCTCAGAGTGGAGGAAGAAGACGAGAAGCCGAGGGAACTCGGGCTGCAGAATTATGTC
CCAGAGGATGAGGACCTGGAGAGCAGGAGGGTACCCCCGATCGAGCCAGTCATGGAGGAA
GTGAACCCAGCCAACCTCGCTCCCTGGAAGCCTGAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AAAAGVGRLEEEALRRKERLRALREKTGRKDKQEGELKAKQPREEEEGEKHRELRLRNYVPEDEDLKRRRVPQAKPVAVEEKVKEQLEAAKPE
AAAA.VG.L.EEAL.RK.RLRAL.EK.G.KDK..GE.K.K..R.EEE.EK.REL.L.NYVPEDEDL..RRVP...PV..EE.....L...KP.
Retrocopy
AAAASVGQLKEEALQRKKRLRALQEKAGHKDKEDGEPKTKRLRVEEEDEKPRELGLQNYVPEDEDLESRRVPPIEPV-MEEVNPANLAPWKPD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide