RetrogeneDB ID:
retro_opri_759
Organism:
Location:
scaffold_28886:37928-38309 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.25 %
Coverage:
70.72 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
ARF1
Parental gene aliases:
No gene alias available
Parental gene description:
ADP-ribosylation factor 1 [Source:HGNC Symbol;Acc:652]

Genomic region (view in browser)





>retro_opri_759
ATGGGGAACATCTTTGCAGACCTCTTAAAGGGCTTTTTTGGCAAAAGGGAAATGCGCATC
CTCATAGTGGGCCTGGATGCTGCAGGGAAGACGATTTTGTGCAAGCTGAAGCTCAGTGAG
ATCATGACCACCAATCCCACCATAGGTTTCAATGTGGAGACTGCAGAATTCAAGAACATC
AGCTTCACAGTGTGGAATGTAGGCTGCCAGGACAAGACTCAGTCACTGTGGTGCCACTAC
TTCCAAAATACCCAAGGCTTGATCTTTGTGGTGGACAGCAATGACAGACAGCATGTGAAT
GAGGCAAGGAAGGAGCTCATGAGGATACTAGCTGAGGATGAGCTGAGGGATGCAGTCCTC
CTAGTGTCTGCCAATAAGCGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV
MGNIFA.L.KG.FGK.EMRIL.VGLDAAGKT.IL.KLKL.EI.TT.PTIGFNVET.E.KNISFTVW.VG.QDK...LW.HYFQNTQGLIFVVDSNDR..V
Retrocopy
MGNIFADLLKGFFGKREMRILIVGLDAAGKT-ILCKLKLSEIMTTNPTIGFNVETAEFKNISFTVWNVGCQDKTQSLWCHYFQNTQGLIFVVDSNDRQHV


Parental protein
NEAREELMRMLAEDELRDAVLLVFANKQ
NEAR.ELMR.LAEDELRDAVLLV.ANK.
Retrocopy
NEARKELMRILAEDELRDAVLLVSANKR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide