RetrogeneDB ID:
retro_opri_760
Organism:
Location:
scaffold_28964:2764-3247 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.01 %
Coverage:
56.06 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
YBX2
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 2 [Source:HGNC Symbol;Acc:17948]

Genomic region (view in browser)





>retro_opri_760
CCCTCCACCACAGGCATGGGCCTCCCAGAGCTGGCACATGCCAGTGCAGACAAGAAGATT
CTCGCCACCAAAGTGCTGGGCAGAGTGAAATGGTTCAACGTCAAGGAGCGCTACGGATTT
ATCACCACAACAGATACCCAGGATGACATCTTTGTCCACCAATCAGCTATACAAAAGAAC
AACCCCTGGAAGTACCTGCCCAGCGTGGGAGATGGTGAGCTAGTTGAGTTTGACGTGGTG
GAGGGCAAGAAGGGCGTGGAAGCGGCCAATGTTACTGGCCCGGGGGGAGTTGCTGTCCAG
GGCAGCAAGTATGTGCCTGAGCGTACCCGATCCCGGCGCTCCCCACGGCGGAGGGCTCCT
AGGCCCCACTACGCACATGGCTGCCTCCCCACTGACAGCGATAGCTCAGATGGAGCAGCT
GATGGCCAGGCCCGTCCTGGCTGGCGCCGAGTCAGGCGGCGAAGGCTCCCACGATGCTAC
CAG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PATAASGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVSV
P.T...G.P...A...ADK..LA..VLG.VKWFNV...YGFI...DT..D.FVHQ.AI..NNP.K.L.SVGDGE.VEFDVVEG.KG.EAANVTGPGGV.V
Retrocopy
PSTTGMGLPEL-AHASADKKILATKVLGRVKWFNVKERYGFITTTDTQDDIFVHQSAIQKNNPWKYLPSVGDGELVEFDVVEGKKGVEAANVTGPGGVAV


Parental protein
KGSRYALNR----RSFRRFILRPRSAASSLMVTEASSVGQNLGSEGERAEDSGQRLRRRPPPFFYR
.GS.Y...R....RS.RR...RP..A...L.....SS.G...G.....A.....R.RRR..P..Y.
Retrocopy
QGSKYVPERTRSRRSPRRRAPRPHYAHGCLPTDSDSSDGAADG----QARPGWRRVRRRRLPRCYQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide