RetrogeneDB ID:
retro_opri_801
Organism:
Location:
scaffold_3148:6079-6440 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.18 %
Coverage:
78.57 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS27A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S27a [Source:HGNC Symbol;Acc:10417]

Genomic region (view in browser)





>retro_opri_801
CAGATCTTTGTCAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTTGAGCCCTCGGAT
ACAATAGAAAATGTATAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCAGATCAGCAA
AAACTGATCTTTGCTGGCAAGCAGCTGCAAGATGGCCGAAGTTTATCTGACTACAACATT
CAGAAGGAGTGCACTCTGCACCTGGTGCTGAGACTGTGGTGGTGCCAAGAAAAGGAAGAA
GTCGTACACCACTCCCAAGAAGAAGAAGCACAAGAGGAAGAAGGTGAAGCTGGCTGTCCT
CAAGTACTACAGGGTGGATGAGAACGGTAAAGTAAGCCGCCTGCGTCGCGAGTGCCCCTC
T


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QIF-QTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL-RGGAKKRKKKSYTTPKKNKHKRKKVKL
QIF..TLTGKTITLEVEPSDTIENV.AKIQDKEGIPPDQQ.LIFAGKQL.DGR.LSDYNIQKE.TLHLVLRL..G..K...KKSYTTPKK.KHKRKKVKL
Retrocopy
QIFVKTLTGKTITLEVEPSDTIENV*AKIQDKEGIPPDQQKLIFAGKQLQDGRSLSDYNIQKECTLHLVLRL\GGAKKR--KKSYTTPKKKKHKRKKVKL


Parental protein
AVLKYYKVDENGKISRLRRECPS
AVLKYY.VDENGK.SRLRRECPS
Retrocopy
AVLKYYRVDENGKVSRLRRECPS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide