RetrogeneDB ID:
retro_opri_817
Organism:
Location:
scaffold_3389:71140-71575 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.56 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL23A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L23a [Source:HGNC Symbol;Acc:10317]

Genomic region (view in browser)





>retro_opri_817
CCCGCCCCTCCCAAAGCCGAAGCCAAAGCCAAGGCCCTGAAGGCCAAGAAGGCGGTGCTG
AAAGGTGTCCACAGCCACAAGAAGAAGATCCGCACGTCTCCCACTTTCCGGAGGCCCAAG
ACGCACCTGCGCCGGCAGCCCAAATACCCCCAGAAGAGTGCCCCCAGGAGGAATAAGCTT
GACCACTGCGCCATCATCAAGTTCCCCCTGACCACAGAGCCCGCTATGAAGAAGATAGAA
GACAACAACACACTGGTGTTCATTGTGGATGTCAAGGCCAACAAGCACCAGATCAAACAA
GCCATGAAGAAGCTCTATGACATTGATGTGGCCAAAGTCAACACCCTGATCAGGCCCGAT
GGAGAAAAGAAGGCGTACGTGCGGTTGGCTCCTGATTATGATGCTCTGAATGTTGCCAAC
AAAATTGGGATCATC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PAPPKAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTQRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQI
PAPPKAEAKAKALKAKKAVLKGVHSHKKK.IRTSPTFRRPKT..LRRQPKYP.KSAPRRNKLDH.AIIKFPLTTE.AMKKIEDNNTLVFIVDVKANKHQI
Retrocopy
PAPPKAEAKAKALKAKKAVLKGVHSHKKK-IRTSPTFRRPKTH-LRRQPKYPQKSAPRRNKLDHCAIIKFPLTTEPAMKKIEDNNTLVFIVDVKANKHQI


Parental protein
KQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII
KQA.KKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDAL.VANKIGII
Retrocopy
KQAMKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALNVANKIGII


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide