RetrogeneDB ID:
retro_opri_829
Organism:
Location:
scaffold_3499:4111-4633 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.7 %
Coverage:
59.79 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
AGPAT5
Parental gene aliases:
No gene alias available
Parental gene description:
1-acylglycerol-3-phosphate O-acyltransferase 5 [Source:HGNC Symbol;Acc:20886]

Genomic region (view in browser)





>retro_opri_829
ATAATCCCATATGGAGATTTGCCAAAAAATAAAGAAAATATAATATATTTAGCAAATCAT
CGAAGCACAGTCGACTGGATCATTGCTGATATGTTGGCCATCAGGCAGAATGCTCTTGGA
CATGTGTGGTATGTGCTCAAAGATGGCTTAAAATGGCTTCCTCTGTATGGGTGCTACTTG
TCTCAGCATGGAGGAATCTATGTAAAGCGAAGTGCCAAATTCAACGAGAAAGAGATGAGA
AGCAAGCTGCAGAGCCACGTGGCCGCAGGAACTCCAATGTATCTTGTGATATTTCCAGAG
GGAACAAGATATAATCCAGAACAAAGTGAAGTCCTTTTGGCTAGTCAAACATTTGCTGCT
CAGCAAGGTCTCCCAGTATTAAAGCATGTGCTAACACCAAGAATAAAGGCAACTTGCATC
GCTTTTGATTCTCTGAAGAATTACTTAGATGCAATTTATGATGTTACAGTGGTTTATGAG
GGCAAGACTGATAAAGGGCAGCGGAAAGAATCGCCCTCCATG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IILYGDLPKNKENIIYLANHRSTVDWIIADMLAIRQNALGHVRYVLKDGLKWLPLYGCYLSQHGGIYVKRSAKFNEKEMRSKLQSHVAAGTPMYLVIFPE
II.YGDLPKNKENIIYLANHRSTVDWIIADMLAIRQNALGHV.YVLKDGLKWLPLYGCYLSQHGGIYVKRSAKFNEKEMRSKLQSHVAAGTPMYLVIFPE
Retrocopy
IIPYGDLPKNKENIIYLANHRSTVDWIIADMLAIRQNALGHVWYVLKDGLKWLPLYGCYLSQHGGIYVKRSAKFNEKEMRSKLQSHVAAGTPMYLVIFPE


Parental protein
GTRYNPEQSEVLLASQTFAAQQGLPALKHVLTPRIKATHIAFDSLKNYLDAIYDVTVVYEGKTDKGQRKESPSM
GTRYNPEQSEVLLASQTFAAQQGLP.LKHVLTPRIKAT.IAFDSLKNYLDAIYDVTVVYEGKTDKGQRKESPSM
Retrocopy
GTRYNPEQSEVLLASQTFAAQQGLPVLKHVLTPRIKATCIAFDSLKNYLDAIYDVTVVYEGKTDKGQRKESPSM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide