RetrogeneDB ID:
retro_opri_873
Organism:
Location:
scaffold_39357:27321-27696 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.6 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS25
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S25 [Source:HGNC Symbol;Acc:10413]

Genomic region (view in browser)





>retro_opri_873
ATGCCACCCAAGGATGACAAGAAGAAGAAAGACGCCGGGAAATCGGCCAAGAAGGATAAG
GACCCCGTGAACAAATCGGGGGGCAAGGCCAAGAAGAAGAAGTGGTCCAAAGGAAAAGTT
TGGGACAAGCTCAACAACCTGGTTCTGTTTGACAAAGCCACATACGACAAGCTCTGCAAG
GAAGTCCCCAACTACAAGCTCATCACGCCCGCTGTGGTCTCCGAGAGACTCAAGATCTGT
GGGTCCCTGGCCAGGGCAGCCCTGCAGGAGCTCCTGAGTAAAGGACTTATCAAACTGGTT
TCAAAGCACAGAGCTCAAGTAATTTACACCAGAAACACCAAGGGTGGAGATACACCAGCT
GCTGCTGAAGATGCA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLV
MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKV.DKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKI.GSLARAALQELLSKGLIKLV
Retrocopy
MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVWDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKICGSLARAALQELLSKGLIKLV


Parental protein
SKHRAQVIYTRNTKGGDAPAAAEDA
SKHRAQVIYTRNTKGGD.PAAAEDA
Retrocopy
SKHRAQVIYTRNTKGGDTPAAAEDA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide