RetrogeneDB ID:
retro_opri_9
Organism:
Location:
scaffold_12702:57689-58544 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
99.3 %
Coverage:
67.7 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_opri_9
CTCTCTCTCTTCCTTAAAGCCTTTTCTGAAACAGAGCAGACAAAATTGGCGATGCTGTCC
GGGATCCTGCTGGGCAATGGCACCCTTCCAGCCAGCATCCTCACCAGCCTCTTCACCGAC
AACCTGGTCAAGGAAGGCATCGCGGCCTCGTTTGCCGTCAAGCTCTTCAAGGCCTGGATG
GCAGAGAAAGACGCCAACTCTGTTACCTCCTCGCTGAGAAAAGCCAACCTTGACAAGAGG
CTGCTTGAACTCTTTCCGGTTAACCGGCAGAGCGTGGATCATTTTGCTAAGTACTTCACT
GACGCGGGCCTCAAGGAGCTGTCCGACTTCCTCCGGGTGCAGCAGTCCCTGGGCACCAGG
AAAGAGCTACAGAAGGAGCTCCAGGAGCGGCTCTCACAGGAGTGCCCCATCAAGGAGGTG
GTGCTTTACGTCAAAGAAGAAATGAAGAGGAATGAGCTTCCGGAAACGGCGGTGATTGGA
CTCCTGTGGGCCTGCATCATGAATGCCGTGGAGTGGAACAAGAAGGAAGAGCTGGTCGCC
GAGCAAGCTCTCAAGCACCTGAAGCAATACGCTCCCCTCCTGGCTGTGTTCAGCTCCCAA
GGCCAGTCGGAGCTGGCCCTGCTGCAGAAGGTCCAGGAGTACTGCTACGACAACATCCAC
TTCATGAAGGCCTTTCAGAAGATCGTGGTTCTCTTCTACAAAGCTGATGTTCTGAGTGAA
GAAGCAATACTGAAATGGTATAAAGAAGCCCACGTTGCCAAAGGCAAAAGTGTTTTCCTT
GACCAGATGAAGAAGTTTGTGGAGTGGTTGCAGAACGCAGAAGAAGAGTCTGAATCGGAA
GGTGAAGAAAACTAA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LLLFLKAFSETEQTKLAMLSGILLGNGTLPASILTSLFTDNLVKEGIAASFAVKL-KAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFT
L.LFLKAFSETEQTKLAMLSGILLGNGTLPASILTSLFTDNLVKEGIAASFAVKL.KAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFT
Retrocopy
LSLFLKAFSETEQTKLAMLSGILLGNGTLPASILTSLFTDNLVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKYFT


Parental protein
DAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNELPETAVIGLLWACIMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQ
DAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNELPETAVIGLLWACIMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQ
Retrocopy
DAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNELPETAVIGLLWACIMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQ


Parental protein
GQSELALLQKVQEYCYDNIHFMKAFQKIVVLFYKADVLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEESESEGEEN
GQSELALLQKVQEYCYDNIHFMKAFQKIVVLFYKADVLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEESESEGEEN
Retrocopy
GQSELALLQKVQEYCYDNIHFMKAFQKIVVLFYKADVLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEESESEGEEN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide