RetrogeneDB ID:
retro_opri_909
Organism:
Location:
scaffold_44:838266-838626 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.0 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL31
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]

Genomic region (view in browser)





>retro_opri_909
ATGGTTCTCGCAAAGAAGGACAGCGAGAAGGGCTATTCTGGCATCAACGAGGTGGCGATA
CCAGAGCACACCATCAACATTCACAAAAGCATCCACAGAGTGGACATCAAGAAGCTGGTT
CGTTGGGCACTGAAACAGATTTGGAGGTTTGCCACGAAAAAGATGGGGACTCCAGATGTG
TGCATTGATCCCAGGCTGAACAAAGCTGTCTGGGCCAAAGGAATAAGGAATGTCCTATAT
CACATCCATTTGAGATCAACCAGAAAACACAAGGAGAATGAAGACTCGCCACACAAGCTC
TCTACTTTGGTTACCTATGTACTTGTCACCACTTTCAAAATCTACACTGTAGATGAGAAC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPN
M..AKK..EK..G.S.INEV...E.TINIHK.IH.V..KK....ALK.I..FA.K.MGTPDV.ID.RLNKAVWAKGIRNV.Y.I..R..RK..E.EDSP.
Retrocopy
MVLAKKDSEK--GYSGINEVAIPEHTINIHKSIHRVDIKKLVRWALKQIWRFATKKMGTPDVCIDPRLNKAVWAKGIRNVLYHIHLRSTRKHKENEDSPH


Parental protein
KLYTLVTYVPVTTFKNLQTVNVDEN
KL.TLVTYV.VTTFK......VDEN
Retrocopy
KLSTLVTYVLVTTFK---IYTVDEN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide