RetrogeneDB ID:
retro_opri_963
Organism:
Location:
scaffold_5076:109142-109682 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
99.44 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
DESI2
Parental gene aliases:
No gene alias available
Parental gene description:
desumoylating isopeptidase 2 [Source:HGNC Symbol;Acc:24264]

Genomic region (view in browser)





>retro_opri_963
TACTGGATGAACGAATACACCTCATCTATCGGAATTGGAGTTTTTCATTCACGAATTGAA
GTTTATGGTAGAGAATTTGCTTATGGTGGTCATCCTTACCCTTTTTCTGGAATATTTGAG
ATTTCCCCAGGAAATGCTTCTGAACTAGGAGAAACATTTAAATTTAAAGAAGCCGTTGTT
TTAGGAAGCACTGACTTCCTAGAAGATGATATAGAAAAAATTGTAGAAGAACTGGGAAAA
GAATACAAAGGCAACGCTTATCATTTGATGCATAAAAATTGCAATCACTTCTCTTCAGCT
TTATCAGAGATTCTTTGTGGGAAAGAGATTCCTCGCTGGATCAATCGGCTTGCCTACTTC
AGCTCCTGCATACCCTTTCTACAGAGTTGCCTCCCGAAGGAGTGGCTCACGCCAGCAGCC
CTGCAGTCCAGTGTCAGCCAGGAGCTGCAGGATGAACTGGAGGAGGCAGAGGATGCTGCG
GCAGCCGCTTCTATGGCAAGCAGTGCAGCAGGCTCCAGGCCTGGGCGCCACACTAAACTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSA
YWMNEYTSSIGIGVFHS.IEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSA
Retrocopy
YWMNEYTSSIGIGVFHSRIEVYGREFAYGGHPYPFSGIFEISPGNASELGETFKFKEAVVLGSTDFLEDDIEKIVEELGKEYKGNAYHLMHKNCNHFSSA


Parental protein
LSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQDELEEAEDAAAAASMASSAAGSRPGRHTKL
LSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQDELEEAEDAAAAASMASSAAGSRPGRHTKL
Retrocopy
LSEILCGKEIPRWINRLAYFSSCIPFLQSCLPKEWLTPAALQSSVSQELQDELEEAEDAAAAASMASSAAGSRPGRHTKL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide