RetrogeneDB ID:
retro_opri_964
Organism:
Location:
scaffold_50799:5149-5671 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.53 %
Coverage:
57.67 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_opri_964
CTTTACAATATCATCATGTCTTATGAAGTCTGTGCCTGGCTCATAGTTGGAGTGTACATC
GTGAGTTTGGTTGGTGCCATGGTACATACTATTTGTATGCTAAGGGTTTTTTTCTGTAAG
GCTGATATAATCAATCATTACTTCTGTGATCTTTTTCCACTACTGAGACTTTCCTGTTCC
AGTACTTATGTCAATGAGGTTGTACTTTTGTGCTTCAGCACATTCAACATCCTTGTTCCA
GTGCTGATCATCCTCAGCTCTTACAGCTTCATCATTCACAGCATCCTGGGCATCCATTCC
ACCAAGGGTCGGTCCAAGGCCTTCAGCACCTGCAGCTCTCATTTTTTAGCTGTTGGCTTG
TTTTTTGGTTCTCTGGCGTTTATGTACCTACAGCCATCATCTGGCAATGACCTTGGCCAA
AACAAAGTGTCTTCTGTAATTTATACCATTATTGTACCCATGTTGAATCCACTTATCTAC
AGTTTGAGGAATAAAGATGTTAAGGTTGCCCTTAACAAGGTA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LYNIIMSYEVCAWLIVGVYIVSLVGAMVHTICMLRVFFCKADIINHYFCDLFPLLRLSCSSTYVNEVVLLCFSTFNILVPVLIILSSYSFIIHSILGIHS
LYNIIMSYEVCAWLIVGVYIVSLVGAMVHTICMLRVFFCKADIINHYFCDLFPLLRLSCSSTYVNEVVLLCFSTFNILVPVLIILSSYSFIIHSILGIHS
Retrocopy
LYNIIMSYEVCAWLIVGVYIVSLVGAMVHTICMLRVFFCKADIINHYFCDLFPLLRLSCSSTYVNEVVLLCFSTFNILVPVLIILSSYSFIIHSILGIHS


Parental protein
TKGRSKAFSTCSSHFLAVGLFFGSLAFMY-SPSSLNSMDQGKVSSVFYTIIVPMLNPLIYSLRNKDVHIAMKKI
TKGRSKAFSTCSSHFLAVGLFFGSLAFMY..PSS.N...Q.KVSSV.YTIIVPMLNPLIYSLRNKDV..A..K.
Retrocopy
TKGRSKAFSTCSSHFLAVGLFFGSLAFMYLQPSSGNDLGQNKVSSVIYTIIVPMLNPLIYSLRNKDVKVALNKV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide