RetrogeneDB ID:
retro_opri_971
Organism:
Location:
scaffold_5138:73750-74203 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.04 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS14
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S14 [Source:HGNC Symbol;Acc:10387]

Genomic region (view in browser)





>retro_opri_971
ATGGCACCTCGCAAGGGGAAGGAGAAGAAGGAGGAGCAGGTCATCAGCCTCGGGCCTCAG
GTGGCCGAGGGGGAGAATGTCTTTGGGGTCTGCCACATCTTTGCGTCCTTCAATGACACC
TTTGTCCACGTCACTGATCTTTCTGGGAAGGAAACCATCTGCCACGTGACTGGTGGAATG
AAGGTGAAGCCTGATAGAGATGAATCCTCGCTATATGCTGCCATGTTGGCTGCCCAGGAT
GTGGCCCAGAGGTGCAAAGAGATGGGCATCACTGCCCTACACATCAAACTGCGGGCCACA
GGAGGAAATAGGACCAAAACCGCTGGACCTGGAGCCCAGTCAGCTCTCAGAGCCCTTGCC
CACTCGGGTATGAAAATTGGGCGAATTGAGGATGTCACCCCGATTCCCACCGACAGCACC
TGCAGGAAGGGGGGTCGCCGTGGTCGTCGCCTG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHLKLRAT
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETIC.VTGGMKVK.DRDESS.YAAMLAAQDVAQRCKE.GITALH.KLRAT
Retrocopy
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICHVTGGMKVKPDRDESSLYAAMLAAQDVAQRCKEMGITALHIKLRAT


Parental protein
GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
GGNRTKT.GPGAQSALRALA.SGMKIGRIEDVTPIP.DST.RKGGRRGRRL
Retrocopy
GGNRTKTAGPGAQSALRALAHSGMKIGRIEDVTPIPTDSTCRKGGRRGRRL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide