RetrogeneDB ID:
retro_opri_978
Organism:
Location:
scaffold_5212:119628-121128 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.42 %
Coverage:
87.13 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RNGTT
Parental gene aliases:
No gene alias available
Parental gene description:
RNA guanylyltransferase and 5'-phosphatase [Source:HGNC Symbol;Acc:10073]

Genomic region (view in browser)





>retro_opri_978
TGCCCGACAACCGAGGTCACCAATACATTTATTCGTCTGTGTGAGCGATTTCACGACAGA
ACGCCACCCGAACTGATCGGTGTTCATTGTACCCATGGTTTCAATCGTACTGGCTTCCTC
ATTTGTGCCTTTTTGGTGGAGAACATGGATTGGAGCATTGAAGCAGCAGTTGCTACTTTT
GCCCAAGCCAGACCACCAGGAATCTATAAGGGCGATTATTTGAAGGAACTCTTTTGGCGC
TATGGCGCTAGAGAAGCACCACCCCCACCTCTCTTGCCAGATTGGTGTTTGGAGGATGAG
CAAGATGAAGGTGAGGAAGAGGATGGAAACAAGGAATCAGAACCCAGATCAAGTGCTTCC
TTTGGCAAAAGGAGGAAAGAAAGGTTGAAAGTGGGTGCCATTTTCTTGGAAGGTATAACT
GTGAACGGTGTGACTCAAGTAACAACTCAACCAAAGCTAGGAGAGGTACAACAGAAGTGT
CATCAATTCTGTGGCTGGGAAGGGTCTGGATTCCCTGGAGCACAGCCCGTTTCCATGGAC
AAGCAAAATATTACACTTTTAGAGCAGAAGCCATATAAAGTAAGCTGGAAAGCAGATGGC
ACTCGTTACATGATGTTGGTTGATGGCACAAATGAAGTCTTTATGATTGATCGAGATAAT
TCAGTGTTTCATGTTTCTAATCTGGAATTTCCATGTCGGAAAGACCTTCAAATCCATTTA
TCGAATACTCTTTTGGATGGCGAGATGATTATTGACAGAGTAAACGGACAGGCTCTTCCT
AGATATTTGATATATGACATCATTAAATTCAATGCACAGCCAGTTGGAGATTGCGACTTG
AATGTCCGCTTGCAGTGTATAGAACGAGAAATTATAAATCCTCGGCACGAGAAAATGAAG
ACCGGACTCATTGACAAGACACGGGAACCATTTAGTGTCAGAAAGAAGCCGTTTTTTGAC
ATTCATACTTCAAGAAAGCTGCTTGAAGGAAATTTTGCCAAACAAGTCAGTCATGCAGTG
GATGGACTTATATTTCAGCCCATCGGGAAGTATAAGCCTGGTCGGTGTGATGATATTTTG
AAGTGGAAACCTCCCAGTTTGAATTCTGTGGATTTCCGCCTGAAGATAACAAGACTGGGA
GGAGAAGGGCTACTTCCTCAGAATGCCGGTCTTCTCTATGTTGGAGGCTACGAAAGACCC
TTTGCCCAAATCAAGGTGACAAAAGAGCTCAATCAGTATGACAACAAAATCATAGAATGC
AGATTTGAGAAGAACAGCTGGGTCTTCATGAGACCGAGAACAGACAAAAGTTTTCCGAAT
GCCTATAACACTGCCATGGCTGTGTGCAATAGCATCTCAAACCCTGTCACCAAGGAGATG
CTGTTTGAGTTCATCGACGGATGTGCTGCAGCTTTTCAAGGACAGAAGCAAAAGCATCAT
CTGAGCCCCGACACAGAGCTCATGCCCCTGCCGCCTCCCAAAAGACCGCGCCCTGCCACC


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
CPTTEVTNTFIRLCERFNDRTPPELIGVHCTHGFNRTGFLICAFLVEKMDWSIEAAVATFAQARPPGIYKGDYLKELFRRYGDIEEAPPPPLLPDWCFED
CPTTEVTNTFIRLCERF.DRTPPELIGVHCTHGFNRTGFLICAFLVE.MDWSIEAAVATFAQARPPGIYKGDYLKELF.RYG...EAPPPPLLPDWC.ED
Retrocopy
CPTTEVTNTFIRLCERFHDRTPPELIGVHCTHGFNRTGFLICAFLVENMDWSIEAAVATFAQARPPGIYKGDYLKELFWRYG-AREAPPPPLLPDWCLED


Parental protein
DEDEDEEEDGKKESEPGSSASFGKRRKERLKLGAIFLEGITVKGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNIKLLEQKPYKVSWKAD
..DE.EEEDG.KESEP.SSASFGKRRKERLK.GAIFLEGITV.GVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNI.LLEQKPYKVSWKAD
Retrocopy
EQDEGEEEDGNKESEPRSSASFGKRRKERLKVGAIFLEGITVNGVTQVTTQPKLGEVQQKCHQFCGWEGSGFPGAQPVSMDKQNITLLEQKPYKVSWKAD


Parental protein
GTRYMMLIDGTNEVFMIDRDNSVFHVSNLEFPFRKDLRIHLSNTLLDGEMIIDRVNGQAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIINPRHEKM
GTRYMML.DGTNEVFMIDRDNSVFHVSNLEFP.RKDL.IHLSNTLLDGEMIIDRVNGQA.PRYLIYDIIKFNAQPVGDCD.N.RLQCIEREIINPRHEKM
Retrocopy
GTRYMMLVDGTNEVFMIDRDNSVFHVSNLEFPCRKDLQIHLSNTLLDGEMIIDRVNGQALPRYLIYDIIKFNAQPVGDCDLNVRLQCIEREIINPRHEKM


Parental protein
KTGLIDKTQEPFGVRNKPFFDIHTSRKLLEGNFAKAVSHEMDGLIFQPIGKYKPGRCDDILKWKPPSLNSVDFRLKITRMGGEGLLPQNVGLLYVGGYER
KTGLIDKT.EPF.VR.KPFFDIHTSRKLLEGNFAK.VSH..DGLIFQPIGKYKPGRCDDILKWKPPSLNSVDFRLKITR.GGEGLLPQN.GLLYVGGYER
Retrocopy
KTGLIDKTREPFSVRKKPFFDIHTSRKLLEGNFAKQVSHAVDGLIFQPIGKYKPGRCDDILKWKPPSLNSVDFRLKITRLGGEGLLPQNAGLLYVGGYER


Parental protein
PFAQIKVTKELKQYDNKIIECKFENNSWVFMRQRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDRCAAAFQGQKRKHHLDPDAELMPPPPPKRPRPA
PFAQIKVTKEL.QYDNKIIEC.FE.NSWVFMR.RTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFID.CAAAFQGQK.KHHL.PD.ELMP.PPPKRPRPA
Retrocopy
PFAQIKVTKELNQYDNKIIECRFEKNSWVFMRPRTDKSFPNAYNTAMAVCNSISNPVTKEMLFEFIDGCAAAFQGQKQKHHLSPDTELMPLPPPKRPRPA


Parental protein
T
T
Retrocopy
T


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide