RetrogeneDB ID:
retro_trub_1
Organism:
Location:
scaffold_119:135184-136327 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.17 %
Coverage:
63.03 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
KCNJ8
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_1
ATGTTGTCCAGGAAAGGGCTCATTCCTGAGGAATATCTGCTGACACGATTGGCCGAGGAT
GTCCTGCAGCCCAAGTTTAAGGCGAAACAGGGGAAGGCTCGGTTCGTGGCCAAGAACGGC
GCCTGCAATGTGGCGCACACGAACATCCGAGAGCAGGGCCGGTTCCTCCAGGACGTCTTC
ACTACTCTGGTGGATTTAAAATGGCTCCACACGCTCATCATCTTCACCATGTCGTTTCTG
TGCAGTTGGCTCCTCTTCGGGATGATCTGGTGGCTCGTCGCCTTCGCGCACGGCGACTTG
TTCCAAACAGGAGACGAGTTCGTCCCGTGCGTCACGGAGGTTCACTCGTTCTCCTCCGCG
TTCCTTTTCTCTATAGAGGTGCAGGTGACGATCGGCTTCGGCGGACGGATGATCACGGAG
GAATGCGTGTCCGCCATCGTCATCCTGATCGTCCAGAACATCGTCGGTCTGGTGATCAAC
GCCATCATGCTCGGGTGCATCTTCATGAAAACCGCGCAGGCCAACCGGCGCGCGGAGACG
CTGATTTTCAGTAAACACGCGGTCATCTCGGTCCGCAACAACAAGCTCTGCTTCATGATC
CGCCTCGGCGACCTGAGGAAAAGCATGGTCATTAGCGCCTCCGTGCGGATGCAAGTGGTC
AGGAGAACCACCACCGAGGAGGGCGAGGTGGTGCCCCTGGACCAGATCGATATCCATATG
GACAACCCGGTGGGCACCAACGGGATCTTCCTGGTGTCCCCGCTCATCATATGTCACGTG
ATCGACAAGGAAAGCCCCCTGTACGACCTGTCCGCGACCGATCTGCAGCACGAAGACATC
GAGGTGATCGTGGTGCTGGAGGGGGTGGTGGAGACCACTGGCATCACCATGCAGGCCAGG
ACCTCCTACGTGGCGGAGGAGATCTTATGGGGTCAGCGCTTCGTGCCCACGGTGTCCGAG
GAGGAGGGCATGTACGCGGTGGATTACTCCAAGTTCGGCAACACCATGAGGGTTCCGACC
CCCTTCTGCAGCGCCAAGAAACTGGACGAGGCAGGCGGCATCGCCCGACTGAAGCTGGAC
GAGGGCGTCACCTTGCGGCCGTATGTGAGAAAGCGGCGAAGCAACACGGTCCGCAGGTCC
CGG


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
CVTDVKSFTSAFLFSIEVQVTIGFGGRMITEECPAAIAFLITQNIIGLIINAVMLGCIFMKTAQSNRRAETLIFSRHAVIAVRNNRLCFMVRIGDLRKSM
CVT.V.SF.SAFLFSIEVQVTIGFGGRMITEEC..AI..LI.QNI.GL.INA.MLGCIFMKTAQ.NRRAETLIFS.HAVI.VRNN.LCFM.R.GDLRKSM
Retrocopy
CVTEVHSFSSAFLFSIEVQVTIGFGGRMITEECVSAIVILIVQNIVGLVINAIMLGCIFMKTAQANRRAETLIFSKHAVISVRNNKLCFMIRLGDLRKSM


Parental protein
IIGATVRLQVVRKTTTPEGEVIPIHQIDIQTESALNSNSLFLLAPLIICHIIDRTSPLYDLSAMELQCSDLEVIVILEGVVETTGITTQARTSYISEEIQ
.I.A.VR.QVVR.TTT.EGEV.P..QIDI........N..FL..PLIICH.ID..SPLYDLSA..LQ..D.EVIV.LEGVVETTGIT.QARTSY..EEI.
Retrocopy
VISASVRMQVVRRTTTEEGEVVPLDQIDIHMDNPVGTNGIFLVSPLIICHVIDKESPLYDLSATDLQHEDIEVIVVLEGVVETTGITMQARTSYVAEEIL


Parental protein
WGHRFVPIVTEEEGVYSVDYSKFGNTVKIATPLCSARELDEKPSILIQSLQKSELSHQNSLRKRNS
WG.RFVP.V.EEEG.Y.VDYSKFGNT....TP.CSA..LDE...I....L...........RKR.S
Retrocopy
WGQRFVPTVSEEEGMYAVDYSKFGNTMRVPTPFCSAKKLDEAGGIARLKLDEG-VTLRPYVRKRRS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide