RetrogeneDB ID:
retro_trub_11
Organism:
Location:
scaffold_163:225298-226132 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.89 %
Coverage:
77.51 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PURG
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_trub_11
ATGGCGGACAGAGACAGTGGCAGTGACCACGGAGGACCCACCGGAGGCCCCGGCTCGCTG
CCCGCGGGCGCGATGGGTGCCATGTCCCGGCTGCAGCACGATACCGAAGAGCTGGCTTCA
AAACGCGTCGACATTCAGAACAAACGCTTCTACATAGACGTGAAGCAGAATGTTAAAGGC
CGCTTCCTAAAGATAGCCGAGGTCGGCGCTGGTGGAAATAAGAGCCGCCTCACTCTCTCT
ATGTCGGTTGCCGTGGAGTTCCGCGATTATCTTGGGGATTTTATCGAGCATTACGCTCAG
CTGGGCCCGACCAACCCGGACATTGTGCAGGATGAGCCCCGGCGGGCACTCAAGAGCGAA
TTCCTTGTGCGCGAAAATCGGAAATATTACATGGATCTGAAAGAGAACCAGAGGGGGCGG
TTCCTGAGGATCCGGCAGACCGTTAATCGGGGCCCCGGATTGGGAAGCGCGCAAGGCCAG
ACCATCGCTCTGCCGGCCCAGGGTCTCATCGAATTCCGCGACGCTTTGGCCAAACTCATC
GACGACTACGGGGTGGACGAGGAGCCGGCGGAGCTGCCGGAGGGCACCTCGTTCACCGTC
GACAACAAGCGCTTCTTCTTTGACGTCGGCTCCAACAAGTACGGGGTCTTCATGCGGGTC
AGCGAGGTGAAGCCCACGTACCGGAACTCCATCACGGTTCCGTGCAAAGTGTGGTCCAGA
TTCGGCAACACCTTCTGCAAGTACGCAGAGGAGATGAAGAAGATCCATGAGAGGAGTAGA
GAGAAGCGGGCCTCTGAACTGCTACCTGAGGGCTCGCACGGCGAAGAGGACTGA


Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KSKLTLSMSMAPALRYCLGDFIDYYARIGPTCSAASDDHSHRVLKSEFIERDNRKYFLDLKENQRGRFLRIRQTVNKGHGTMGYYGQGIEQTIVLPAQGL
KS.LTLSMS.A...R..LGDFI..YA..GPT......D...R.LKSEF..R.NRKY..DLKENQRGRFLRIRQTVN.G.G.....GQ....TI.LPAQGL
Retrocopy
KSRLTLSMSVAVEFRDYLGDFIEHYAQLGPTNPDIVQDEPRRALKSEFLVRENRKYYMDLKENQRGRFLRIRQTVNRGPGLGSAQGQ----TIALPAQGL


Parental protein
IEFRDALSQLIEDYGDDDHPA-LPEAASFRVDNKRFYFDVGSNRYGIFLKISEVRQPYRNTITVPLKAWARFGENFIKYEEEMRRIFSCHKEKR
IEFRDAL..LI.DYG.D..PA.LPE..SF.VDNKRF.FDVGSN.YG.F...SEV...YRN.ITVP.K.W.RFG..F.KY.EEM..I.....EKR
Retrocopy
IEFRDALAKLIDDYGVDEEPAELPEGTSFTVDNKRFFFDVGSNKYGVFMRVSEVKPTYRNSITVPCKVWSRFGNTFCKYAEEMKKIHERSREKR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide